SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12155

Length: 539 nt

UniGene Fasta

>biog3_v1.0_unigene12155
AATGTAAAAGAACTCTTGCAGCTATTGAAGCGTCAAGGCAGGCTGGAAAGAGCTTATGGAGGGTTTCTTCCACTGTTTTTGGACACATTGCTTCTGATGCAATGTTACAGCCGCTTGGTCACTTTGCAAAGTCGCCTCTTGCACAAAACTATCCTCCCATATGTGCTGGGGATTTTGTTGAGCTAGAACTTGCAGCCATAAATTTGAAGGGGAAGCAAGATGGCATCTTAAATCTAGAAAATGGGAACTGTGAGCAACAAACAGTGGCATAATATTATACCAGAAGTGTTGATGGTTCTTTGCAACTAGAAGAAAATCAGAATAGCCTCTGAAGATTATAATTGGTCTCTACAGTGTGAAATTTCGGTTCTATTTGTATTCTGTTCTACTTTGCTGCAATAAAGAATCAAGTACACGGGTTCAGCTTACAGTCATTGCGTGTAAATATTCTGATACATTTGGTACATTTGAGTCTTTGACGGCATGACTAATTTCTCAAGCACAAAATGTGTAAACCAGAGAACTGTAAACGTGAATGA

Ace file of the UniGene biog3_v1.0_unigene12155

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6979	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	dioxygenase-like protein [Arabidopsis thaliana] dbj\|BAB11066.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM65524.1\| unknown [Arabidopsis thaliana] gb\|AAP37672.1\| At5g48020 [Arabidopsis thaliana] dbj\|BAE99693.1\| hypothetical protein [Arabidopsis	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	lipid transport	GO:0006869	Biological Process	0.0	80%
Blast2go	binding	GO:0005488	Molecular Function	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR003612	-	0.0	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A952

Fln msg: your sequence is shorter than subject: 90 - 270

Fln protein: CKRTLAAIEASRQAGKSLWRVSSTVFGHIASDAMLQPLGHFAKSPLAQNYPPICAGDFVELELAAINLKGKQDGILNLENGNCEQQTVA*

Protein Length: 91

Fln nts: AATGTAAAAGAACTCTTGCAGCTATTGAAGCGTCAAGGCAGGCTGGAAAGAGCTTATGGAGGGTTTCTTCCACTGTTTTTGGACACATTGCTTCTGATGCAATGTTACAGCCGCTTGGTCACTTTGCAAAGTCGCCTCTTGCACAAAACTATCCTCCCATATGTGCTGGGGATTTTGTTGAGCTAGAACTTGCAGCCATAAATTTGAAGGGGAAGCAAGATGGCATCTTAAATCTAGAAAATGGGAACTGTGAGCAACAAACAGTGGCATAA___TATTATACCAGAAGTGTTGATGGTTCTTTGCAACTAGAAGAAAATCAGAATAGCCTCTGAAGATTATAATTGGTCTCTACAGTGTGAAATTTCGGTTCTATTTGTATTCTGTTCTACTTTGCTGCAATAAAGAATCAAGTACACGGGTTCAGCTTACAGTCATTGCGTGTAAATATTCTGATACATTTGGTACATTTGAGTCTTTGACGGCATGACTAATTTCTCAAGCACAAAATGTGTAAACCAGAGAACTGTAAACGTGAATGA

Fln Alignment:

Contig12155___KRTLAAIEASRQAGKSLWRVSSTVFGHIASDAMLQPLGHFAKSPLAQNYPPICAGDFVELELAAINLKGKQDGILNLENGNCEQQTV
D5A952__________________KRTLAAIEAARQGGKSLWRVSSTVFGHIASDAILQPLGHFANSPLAQNYPPICAGDFVELELAAINLKGKQDGVLDLENGNCEQQTV

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
85	83			16	0.994512
237		12	87		0.992554
239	87			12	0.992554
240	87			12	0.992554
250	14			85	0.993533
251			85	14	0.993533
327	16	83			0.994512
329	16			83	0.994512
330		83		16	0.994512
341	80	20			0.995493
377	25		75		0.996473
378		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain