SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12145

Length: 710 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene12145 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7000	16/16

Source	Descriptions	Term	Type	Identity
AutoFact	Putative translocon-associated protein alpha subunit n=1 Tax=Jatropha curcas RepID=C9E1T6_9ROSI	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	translocon-associated protein subunit alpha	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	78%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Translocon-associated protein (TRAP), alpha subunit	IPR005595	-	-
Sma3	TonB box, conserved site	IPR010916	-	-

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
165			90	10	0.90298
267	12		87		0.992554
268	12	87			0.992554
311		75		25	1.0
352	11		88		0.923564
353	87	12			0.992554
355			87	12	0.992554
356			87	12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain