SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12129

Length: 828 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene12129 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17056	54/54

Source	Descriptions	Term	Type	Identity
AutoFact	Photosystem I reaction center subunit XI, chloroplastic n=2 Tax=Cucumis sativus RepID=PSAL_CUCSA	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	photosystem i reaction center subunit xi	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	plastoglobule	GO:0010287	Cellular Component	90%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	90%
Blast2go	membrane part	GO:0044425	Cellular Component	90%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Photosystem I PsaL, reaction centre subunit XI	IPR003757	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
142	33		66		0.997452
143	66			33	0.997452
145		66		33	0.997452
174	33	66			0.997452
229	80		20		0.995493
289		46		53	1.0
520	69		30		1.0
529	25		75		1.0
571		72		27	1.0
600	11			88	0.923564
601		11	88		0.923564
603	88			11	0.923564
604		88		11	0.923564
654	66	33			0.997452
673	33		66		0.997452
675			66	33	0.997452
767	11		88		0.923564
770		88		11	0.923564
822	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain