SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12115

Length: 351 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene12115
AAGTTTTTTTCCCATACGCCCTCCTCGTTAGGGTTTGTGGATTTGGGGTTTATTTAGGGTTTGTTCCTTTAAATAACGTTTTCTCTTTATTGAAGAAAGCGGAGATCAAACGACAGCAGAGGAGACGGAGCCGAAGCAGAAATCAGAACACAATGGTTAAGTATTCAAGCGAGCCTGTTAATCCTACCAAATCATGCAAGGCTCGGGGGTCAGACCTACGTGTCCATTTTAAGAATACTCGGGAAACAGCTCAAGCAGTGAAGAAGTTACCTTTGGCTAAGGCTAAAGCTTATCTTGAGGATGTGCTTGCCCACAAGCAAGCAATACCTTTCCGTCGCTTTTGTGGACATT

Ace file of the UniGene biog3_v1.0_unigene12115 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15542	15/15

Source	Descriptions	Term	Type	Identity
AutoFact	ribosomal protein [Petunia x hybrida]	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	60s ribosomal protein	-	-	91%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L22/L17	IPR001063	-	-
Sma3	Ribosomal protein L22/L17, conserved site	IPR018260	-	-
Sma3	Ribosomal protein L22/L17, eukaryotic/archaeal	IPR005721	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYW9

Fln msg: Distance to subject end: 117 aas, your sequence is shorter than subject: 66 - 183

Fln protein: MVKYSSEPVNPTKSCKARGSDLRVHFKNTRETAQAVKKLPLAKAKAYLEDVLAHKQAIPFRRFCGH

Protein Length: 67

Fln nts: AAGTTTTTTTCCCATACGCCCTCCTCGTTAGGGTTTGTGGATTTGGGGTTTATTTAGGGTTTGTTCCTTTAAATAACGTTTTCTCTTTATTGAAGAAAGCGGAGATCAAACGACAGCAGAGGAGACGGAGCCGAAGCAGAAATCAGAACACA_-_ATGGTTAAGTATTCAAGCGAGCCTGTTAATCCTACCAAATCATGCAAGGCTCGGGGGTCAGACCTACGTGTCCATTTTAAGAATACTCGGGAAACAGCTCAAGCAGTGAAGAAGTTACCTTTGGCTAAGGCTAAAGCTTATCTTGAGGATGTGCTTGCCCACAAGCAAGCAATACCTTTCCGTCGCTTTTGTGGACATT

Fln Alignment:

Contig12115___MVKYSSEPVNPTKSCKARGSDLRVHFKNTRETXXXXXXXXXXXXXXXLEDVLAHKQAIPFRRFCG
A9NYW9__________________MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAQAVKKLPVAKAKAYLEDVLAHKQAIPFRRFCG

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
250	14	85			0.993533
252	14		71		0.984337
253		85		14	0.993533
331		25	75		0.996473
332	25		75		0.996473
333			75	25	0.996473
334		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain