SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12104

Length: 1274 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene12104

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17249	41/49
SustainPine v2.0	sp_v2.0_unigene25072	6/49

Source	Descriptions	Term	Type	Identity
AutoFact	L-galactose dehydrogenase n=2 Tax=Vitis vinifera RepID=A5JPK6_VITVI	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	l-galactose dehydrogenase	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	L-ascorbic acid biosynthetic process	GO:0019853	Biological Process	0.0	87%
Blast2go	L-galactose dehydrogenase activity	GO:0010349	Molecular Function	0.0	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldo/keto reductase	IPR001395	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
397	80			20	0.995493
438		18		81	1.0
444		18		81	1.0
447		20	80		1.0
491	84			15	0.999986
498			90	10	0.90298
516	10		90		0.90298
527		90		10	0.90298
556			80	20	0.999996
613		10	90		0.90298
616			90	10	0.90298
645		15		84	0.999986
778	20	80			1.0
782	86			13	0.999973
789	14		85		0.999981
835	10			90	0.90298
838	90			10	0.90298
839	90			10	0.90298
843	77		22		0.999999
905		30		70	1.0
922	90			10	0.90298
925	90	10			0.90298
928	30		60	10	1.0
929		90	10		0.90298
930	10	70		20	0.999998
933		88		11	0.923564
935		88		11	0.923564
936	11			88	0.923564
942	88	11			0.923564
943	11		88		0.923564
956	75		25		1.0
959			75	25	1.0
985	12		87		0.992554
986		12		87	0.992554
988			87	12	0.992554
989	87			12	0.992554
999		14		85	0.993533
1001			85	14	0.993533
1002			83	16	0.994512
1016	20	80			0.995493
1018	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain