SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12096

Length: 1522 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene12096 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21634	63/66
SustainPine v2.0	sp_v2.0_unigene78536	2/66
SustainPine v2.0	sp_v2.0_unigene80146	1/66

Source	Descriptions	Term	Type	Identity
AutoFact	putative RNA binding protein [Oryza sativa Japonica Group] gb\|ABF97724.1\| KH domain containing protein, expressed [Oryza sativa Japonica Group] dbj\|BAG90551.1\| unnamed protein product [Oryza sativa Japonica Group] gb\|EEE59537.1\| hypothetical protein OsJ_1	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	poly -binding	-	-	69%

Source	InterPros	Term	Type	Identity
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3		IPR018111	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM14

Fln msg: Overlapping hits, possible frame ERROR between 79 and 67, your sequence is shorter than subject: 462 - 490

Fln protein: EEEMGTGTGGDKKWPGWPGENxxxxxxPSQKVGGIIGRKGEFVKKMCEETRSRIKILDGLSGTPERVVMVSAKEEPDSTISPAMDGILKVHKRIIEGIDEVGRTQQAGGAPIITRLLLAGIQSGSLIGKQGATIKSIQENSGAAARVVGAEDIPYCALADDKVLEIQGEPANVHKALELVVSHLRKFLVDRSVLPLFEMNVSKANQSQMEQNLPHQPWSHNQTSSLPNSGSAFGNNSKYTPTAPPHDNYYAPSDLPPETHSHHGLNMYGRDPLGGHSVPNAAPAPVITQVSQRMQIPLSYADAVIGTNGANISYCRRNSGAIITIEETRGVPGEMTVEIHGTASQVQTAQQLIQNFMAGASGPPADVYRASGPPADVYRGSGPPADVYRGSGPPADVYRGSGPPADVYRGSGPPDVYNSIDSGYNSYSGHNTMYPSPRSNTGFAGHSAGGYESNYNNSYRY*

Protein Length: 463

Fln nts: AGAAGAAGAGATGGGAACTGGAACAGGTGGTGATAAAAAGTGGCCCGGATGGCCTGGAGAGAATxxxxxxxxxxxxxxxxxxCCAAGTCAGAAGGTTGGTGGCATAATAGGTCGGAAGGGTGAATTTGTCAAGAAAATGTGCGAGGAGACCAGATCTCGTATTAAGATTCTCGATGGACTTTCAGGCACCCCTGAGCGTGTTGTCATGGTGTCTGCAAAGGAAGAACCTGATTCAACAATTTCTCCAGCAATGGATGGGATCCTTAAAGTTCATAAGCGAATTATTGAAGGTATAGATGAAGTAGGTCGAACTCAACAAGCTGGGGGTGCACCAATAATAACTCGCTTGCTACTAGCAGGCATACAGTCTGGAAGTTTAATTGGTAAGCAAGGCGCAACAATAAAGTCTATTCAGGAAAACTCAGGTGCTGCTGCTCGAGTAGTTGGTGCTGAGGATATCCCATATTGTGCTTTAGCAGATGACAAAGTTCTTGAGATACAAGGAGAGCCTGCAAATGTACACAAGGCCCTTGAGCTAGTTGTTTCTCACCTGAGAAAATTCTTGGTTGACCGCAGCGTTCTTCCTTTGTTCGAAATGAATGTGTCAAAGGCAAATCAGTCTCAGATGGAGCAGAACCTGCCCCACCAGCCATGGAGTCATAATCAAACCAGTTCATTACCTAATAGTGGCAGTGCTTTTGGAAATAACTCCAAATACACACCCACTGCTCCTCCACATGATAATTATTATGCGCCGTCAGACCTTCCTCCAGAAACTCACTCCCACCATGGTTTAAACATGTATGGCAGAGATCCCCTTGGTGGTCATTCAGTGCCAAATGCGGCACCGGCACCTGTTATCACACAGGTTTCTCAGCGGATGCAAATTCCTTTATCATATGCTGATGCCGTGATTGGGACAAATGGTGCAAATATCAGTTATTGTCGAAGAAATAGTGGAGCAATTATAACCATTGAAGAAACTAGAGGAGTTCCTGGGGAAATGACAGTTGAAATTCATGGAACTGCTTCTCAAGTGCAGACGGCACAGCAGTTGATCCAGAACTTTATGGCTGGGGCTTCAGGACCACCAGCAGATGTGTACAGGGCTTCAGGACCTCCAGCTGACGTATATCGAGGTTCAGGACCTCCAGCTGATGTATATCGAGGTTCAGGACCTCCAGCAGATGTGTATCGAGGTTCAGGACCTCCAGCAGATGTGTATCGGGGTTCAGGACCACCAGATGTGTACAATTCTATTGATTCAGGCTATAATTCATATTCAGGGCATAATACCATGTATCCTTCCCCACGATCGAATACTGGATTTGCTGGTCACTCTGCTGGAGGTTACGAGTCCAACTATAACAACAGCTACCGCTATTAGATGAACTTTCTTATGCTCTGGTATTCTACGCTTCTGTTTATACTACTGAGATTTTTTTATGTGGAACCAACGTTGATGTGATTAATGCTAATTTTTAAGCTGTGGCTGAGACATTACCTGAGGCTTGCTACACATT

Fln Alignment:

Contig12096___EEEMGTGTGGDKKWPGWPGENVxxxxVPSQKVGGIIGRKGEFVKKMCEETRSRIKILDGLSGTPERVVMVSAKEEPDSTISPAMDGILKVHKRIIEGIDEVGRTQQAGGAPIITRLLLAGIQSGSLIGKQGATIKSIQENSGAAARVVGAEDIPYCALADDKVLEIQGEPANVHKALELVVSHLRKFLVDRSVLPLFEMNVSKANQSQMEQNLPHQPWSHNQTSSLPNSGSAFGNNSKYTPTAPPHDNYYAPSDLPPETHSHHGLNMYGRDPLGGHSVPNAAPAPVITQVSQRMQIPLSYADAVIGTNGANISYCRRNSGAIITIEETRGVPGEMTVEIHGTASQVQTAQQLIQNFMAGASGPPADVYRASGPPADVYRGSGPPADVYRGSGPPADVYRGSGPPADVYRGSGPPDVYNSIDSGYNSYSGHNTMYPSPRSNTGFAGHSAGG
B8LM14__________________EEEIGTGTGAEKKWPGWPGENVxxxxVPSQKVGGIIGRKGEFVKKMCEETRSRIKILDGLSGTPERVVMVSAKEEPDATISPAMDGILKVHKRIIEGIDEVGRTQQAAGGPTITRLLLAGIQSGSLIGKQGATIKSIQENSGVAAKVVGSEDIPYCALADDKVLEIQGEPANVHKALELVVSHLRKFLVDRSVLPMYEMNMSKTNQSQMEQNLSHQPWSHNQTSSLPNSGSGFGNNSKYTPTAPPHDNYYAPSDLPPETHSHHGLNMYGRDPLGGHSVPNAAPAPVITQVSQRMQIPLSYADAVIGTNGANISYCRRNSGAIITIEETRGVPGEMTVEIHGTASQVQTAQQLIQNFMAGASGPPADVYRASGPPADVYRTSGPPADVYRASGPPADVYRASGPPADVYRASGPPDVYNSIDSGYNSYSGHNTMYTSPRSNTGFAGHSAGG

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
91	33		66		0.997452
94	25		75		0.996473
96	75		25		0.996473
106	16		83		0.994512
107		83		16	0.994512
441	14		85		0.993533
442	85	14			0.993533
444			85	14	0.993533
445		85		14	0.993533
458	16		83		0.994512
750	25			75	0.996473
751	25			75	0.996473
753		75	25		0.996473
862	12		87		0.992554
876	12		87		0.992554
877	12	87			0.992554
878		12		87	0.992554
879	12		75	12	0.975346
880			85	14	0.993533
935	83	16			0.994512
936	83	16			0.994512
938	83		16		0.994512
965	83	16			0.994512
1059	83			16	0.999991
1265	11		88		0.999937
1268		88		11	0.999937
1397	11		88		0.923564
1399		90		10	0.90298
1400	90		10		0.90298
1401	90			10	0.90298
1421	10			90	0.90298
1423		10		90	0.90298
1424	10		90		0.90298
1425		90		10	0.90298
1426		88		11	0.923564
1480		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain