SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12093

Length: 1873 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene12093 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16887	107/109
SustainPine v2.0	sp_v2.0_unigene17765	2/109

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin system component Cue protein [Arabidopsis thaliana] gb\|AAN13090.1\| unknown protein [Arabidopsis thaliana] gb\|AED93879.1\| Ubiquitin system component Cue protein [Arabidopsis thaliana]	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	ubiquitin system component cue protein	-	-	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin system component Cue	IPR003892	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV65

Fln msg:

Fln protein: MSALVCGKRSLFEDLHTPPPISKRLRCSGSNSPIRFSSNSPTRSPTATDIHNQNNSTDIHYLSQLRGLFPDMDEQHLEAVLESCGNDLASAIKSLNELRLGRERDSTPCKSTADSSIVSHVDQTTEGNTDIGIPVEERVANDHVGGAAAAIPVNGSDWVELLLQEMQNASDMDDARIRASRALEALEKAIVSRTGSIVEDLQKENMVLRQQVEGLSRDNGILKRAVAIQHERQKEHDERASELQNLKQILSQYQEQLRTLQVNNYALTLHLRQAQESTSIPGHFHPDVF*

Protein Length: 291

Fln nts: GGCGTTGCAGGGTTCCTCTCTTTCACTATTTTTTAATCTCTGCACACCTCCCAATTAAGGTCAACTATTTTAACCCGAGGTAAACTCCTCCTTCCCCTTTCACAAACCCCTTTTTAGCGCATTCCAGTTCTCTTTCAGATCCATTTTAATGCCTTCGTGGGTTTAATTCTTCTACTCTAGAAAGCCCATTTCAATTCGCTCCTCTGCGTTGTATTAATTGGGGTTTTCTCGCACAAATTCTTTATTTTTCGACCCTTTACCTGAACGGGACTGGTAGTATATACAGGCAGAGGAGATCTTAAGTGATTGGTTGCCATCGGCATTACAATTTACAAGAAGAAGAGGAGGAAAGAAGGGCAGCAGCGCTAATCTCTGGATGGACTGAGGCAATTCAGGGGTTTTTAAGGGGTTTTGAGAGCCAAATTCAAGAGGCAGTTTTACTAGTATTACACAAATACTTTAGCGATAAGATTGGAAACC_-_ATGTCTGCGCTAGTCTGCGGAAAGAGGTCACTTTTTGAAGATCTGCATACTCCGCCACCCATCTCCAAGAGGCTTCGCTGTTCCGGTAGTAATTCGCCAATCCGATTCTCTTCCAATTCTCCCACAAGGAGCCCCACAGCAACAGATATTCATAACCAAAACAACTCTACCGATATTCATTATCTTTCTCAACTCAGAGGGCTTTTCCCCGATATGGATGAACAGCATCTTGAAGCAGTGTTGGAGTCATGTGGCAATGATCTTGCTTCTGCAATCAAGAGTTTGAATGAGCTCCGGTTAGGACGCGAAAGAGATTCAACTCCTTGCAAAAGCACAGCAGATTCAAGCATTGTTTCCCATGTTGATCAAACCACAGAAGGAAATACAGATATCGGCATTCCAGTTGAAGAACGGGTTGCTAATGACCATGTGGGAGGGGCTGCTGCAGCCATTCCAGTTAATGGTTCTGACTGGGTGGAGCTTCTTTTGCAAGAGATGCAGAATGCATCTGATATGGATGATGCAAGAATACGTGCTTCGAGAGCATTGGAGGCACTTGAAAAGGCAATAGTTAGTCGCACGGGTTCTATTGTGGAGGACTTGCAAAAGGAAAACATGGTGCTGAGGCAGCAAGTCGAAGGTCTTTCTCGTGATAATGGCATTCTCAAACGAGCTGTAGCTATACAGCATGAGCGGCAGAAGGAACATGATGAAAGGGCCAGTGAATTGCAGAATCTGAAGCAGATTTTATCACAGTATCAAGAACAGCTAAGGACATTGCAGGTAAATAATTACGCTCTAACACTACACCTACGCCAAGCTCAGGAGAGTACGTCCATTCCAGGGCACTTTCACCCTGATGTCTTCTGA___AAGCTTGATCAACAAGGGTTTGCTTTAAGGATTTGAAAACAAATCAAGCGGAAGTTGAAACATATCTTATGTTTATAAGGTGGTTATGTTAATTAGTTGTTTGTTATTCTTTTAAGATGTTGGTCTCGCTTAGTATTCTTGGAACTAAGTATTCTTGGAACTAAGCGTGTAAAAGTTCCCATACTCTCCTCGTGTCAACCTGCAAAGAGTTTCATGATTCTACCATTTGATAGGATGCATTATTGAAGTTTATATGAAAATGGTGAAACGCCAGCACTTAAACTTGGATGATAGTACTAAATGTTTGGGAGCTATTCTCTCTTCTCCTACAGAACATAATATGCACTTTTGAGGTAAAAGACGAAGCAGGTTTAGGAGGATGTTTAATTAAAATAATGAATTACATATCTTTCGTGAGGATGCCTTGAAGCTTCCCGCTTTGGTGGCTTCTGGAATTATTTGGATTTTGTAAGGTTTGTTCAAACTCTAATTGATACTCTAGTCCCCATGTGGGTTAGACATT

Fln Alignment:

Contig12093___MSALVCGKRSLFEDLHTPPPISKRLRCSGSNSPIRFSSNSPTRSPTATDIHNQNNSTDIHYLSQLRGLFPDMDEQHLEAVLESCGNDLASAIKSLNELRLGRERDSTPCKSTADSSIVSHVDQTTEGNTDIGIPVEERVANDHVGGAAAAIPVNGSDWVELLLQEMQNASDMDDARIRASRALEALEKAIVSRTGSIVEDLQKENMVLRQQVEGLSRDNGILKRAVAIQHERQKEHDERASELQNLKQILSQYQEQLRTLQVNNYALTLHLRQAQESTSIPGHFHPDVF
A9NV65__________________MSALVCGKRSLFEDLHTPPPISKRLRCSGSNSPIRFSANSPTRSPTATDIHHQNQSTEIHHLSQLRGLFPDMDEQHLEAVLESCGNDLASAIKSLNELRLGRERDSIPCKSTAYSIIASHVDQTTEVNTDIGLPVEDRVANDQVGGAAAAIPVNGSDWVELLLQEMQNASNMDDARVRASRALEALEKAIVSRTGSMAENLQKENVVLRQQVEGLSRDNSILKRAVAIQHERQKEHDERGNELQNLKQLLSQYQEQLRTLQVNNYALTLHLRQAQESTSIPGRFHPDVF

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
444		66		33	0.997452
445		66	33		0.997452
446	66			33	0.997452
490	16			83	0.994512
491	16			83	0.994512
493			16	83	0.994512
494		83		16	0.994512
519	12		87		0.992554
522		87		12	0.992554
828	16	83			0.994512
830	83		16		0.994512
872	12	87			0.992554
873	12			87	0.992554
906	11	88			0.923564
907	11			88	0.923564
1189	10		90		0.90298
1190			90	10	0.90298
1191			90	10	0.90298
1232	12		87		0.999964
1233	87			12	0.999964
1439	18			81	0.999994
1441	81			18	0.999994
1442	90		10		0.90298
1446	10		90		0.90298
1448	10	90			0.90298
1728	12		87		0.992554
1817	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain