SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12092

Length: 2281 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene12092
AACGTCGATTCTCAACGTAGTTTAGACGGACGTGCCTCTTTATATTTTTGGTTCTCTGAGTTCCTTCCAGCGCTGTGCAGTCAGCTTTGCTGCGATTATTGTTCTATTTTTTGTTTTCTGAGCATTCAACGGTTTTCTATTTTGGAAAATGGCAAAGGGAGAAGGCCCCGCTATCGGAATCGATCTTGGAACCACATATTCCTGCGTAGGAGTGTGGCAACATGACCGAGTGGAGATTATTGCCAACGATCAGGGAAATCGGACCACTCCATCTTATGTAGCTTTCACCGACACAGAGCGGCTGATCGGAGATGCTGCCAAAAATCAAGTTGCCATGAATCCCACCAACACAGTTTTCGATGCAAAGCGTCTTATTGGAAGGAGATTCTCCGATCCAACAGTCCAGAATGACATGAAGTTGTGGCCCTTCAAAGTCATTTCTGGGCCAGCGGAGAAGCCTATGATTGTTGTTACTTACAAAGGAGAAGAAAAGCAATTCGCTGCAGAGGAAATTTCTTCGATGGTTCTGACTAAAATGAAAGAGATTGCTGAAGCGTATCTTGGAACCACCATCAAGAATGCTGTTGTTACAGTCCCTGCATATTTCAATGACTCTCAGAGGCAGGCTACAAAGGATGCTGGCGTCATTTCTGGACTAAATGTGATGAGAATCATCAACGAACCAACTGCAGCTGCAATTGCTTATGGGCTGGACAAGAAGGCTAGCTCTGTTGGTGAGAAAAATGTTTTGATTTTTGATCTAGGAGGGGGGACTTTTGATGTTTCTCTATTAACTATTGAAGAGGGTATCTTTGAGGTCAAGGCCACGGCAGGAGATACCCATTTGGGTGGTGAAGACTTTGATAATCGGTTAGTTAACCATTTTACTCAGGAATTTAAAAGAAAATATAAGAAAGATCTCGGTAGCAGTGCAAGAGCCCTTAGGAGGTTGAGAACAGCCTGTGAAAGGGCTAAGAGAACGTTGTCTTCCACTGCTCAGACTACCATTGAGATTGATTCTTTGTACGAAGGAATTGATTTTTACTCCACCATTACTAGGGCTAGATTTGAGGAGCTCAACATGGATCTGTTTAGGAAATGCATGGAGCCTGTTGAGAAGTGTTTGAGGGATGCCAAGATGGATAAGAGCAGTGTTCATGATGTTGTGCTTGTGGGAGGATCTACCCGTATCCCTAAAGTGCAGCAATTGTTGCAGGATTTCTTCAATGGAAAGGAGCTCTGCAAGAGTATCAATCCCGATGAAGCTGTCGCTTATGGTGCTGCTGTTCAAGCTGCAATTCTAAGTGGAGAAGGAAATGAGAAGGTGCAAGACCTTTTGCTTCTTGACGTTACTCCCCTGTCACTAGGATTGGAAACTGCGGGAGGAGTGATGACTGTTTTGATCCCGAGGAACACAACGATTCCTACGAAAAAAGAACAAGTCTTCTCCACATACTCTGACAATCAGCCTGGTGTTTTGATCCAAGTATTTGAAGGTGAAAGAGCAAGAACTAAGGACAACAATCTTTTGGGTAAGTTTGAGTTGTCTGGTATCCCTCCTGCTCCAAGGGGTGTGCCTCAGATCACTGTTTGCTTTGACATTGATGCCAATGGTATCCTGAACGTCTCTGCAAAACAAGATCACCATTACCAATGACAAGGGCAGGCTAAGCAAGGATGAGATAGAAAAGATGGTTCAGGATGCAGAGAAATACAAGGCCGAGGATGAAGAACTGAAATTGAAGGTAGAAGCCAAAAATTCTCTAGAGAACTATGCATACAACATGAGGAATACCATCAAAGATGATAAGATTGCAGGAAAGTTGGACCCTGCTGACAAGAAGAAAATCGAGGATGCAGTTGATGGAATTATCAGCTGGTTGGATGGAAACCAGTTGGCCGAGAAGGAAGAGTTTGAGGACAAATTGAAAGAGCTGGAGTCTACTTGCAATCCTATCATTGCAAAAATGTACCAGGGTGAAGGTGGTGCGGGATTTCCAGGTGCTGATGCTTTTGGTGGAGCTTCTGGAGCTGGCGACGAGGGTGCAAGTGGCCCTGGTCCCAAGATCGAGGAAGTGGACTAGATATATTTCTTCAGCACCTTCTATGTGTTTTTTTGTTATTTCATTTGAATTGCTCGGGCTGGAATTTTAGAACTTTAAAATGTGGCCATTTTTGTCAGCCTCAGGATTGTTTCTCTTTGTAGTAGGTATGTAGTATTTGAACTCTCTTATGCAGAGAGTCGTCAAACCATATATTCAACTGGAAGTGTTTGTACATT

Ace file of the UniGene biog3_v1.0_unigene12092 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16232	3/784
SustainPine v2.0	sp_v2.0_unigene22760	774/784
SustainPine v2.0	sp_v2.0_unigene82399	1/784
SustainPine v2.0	sp_v2.0_unigene82702	1/784
SustainPine v2.0	sp_v2.0_unigene82743	1/784

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock cognate 70 kDa protein n=7 Tax=Magnoliophyta RepID=HSP7C_PETHY	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	heat shock protein 70	-	-	96%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Heat shock protein 70	IPR013126	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRY5

Fln msg: Warning!, your query overlaps and the subject is separated,

Fln protein: MAKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPTVQNDMKLWPFKVISGPAEKPMIVVTYKGEEKQFAAEEISSMVLTKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFTQEFKRKYKKDLGSSARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILxxxxxxKITITNDKGRLSKDEIEKMVQDAEKYKAEDEELKLKVEAKNSLENYAYNMRNTIKDDKIAGKLDPADKKKIEDAVDGIISWLDGNQLAEKEEFEDKLKELESTCNPIIAKMYQGEGGAGFPGADAFGGASGAGDEGASGPGPKIEEVD*

Protein Length: 647

Fln nts: AACGTCGATTCTCAACGTAGTTTAGACGGACGTGCCTCTTTATATTTTTGGTTCTCTGAGTTCCTTCCAGCGCTGTGCAGTCAGCTTTGCTGCGATTATTGTTCTATTTTTTGTTTTCTGAGCATTCAACGGTTTTCTATTTTGGAAA_-_ATGGCAAAGGGAGAAGGCCCCGCTATCGGAATCGATCTTGGAACCACATATTCCTGCGTAGGAGTGTGGCAACATGACCGAGTGGAGATTATTGCCAACGATCAGGGAAATCGGACCACTCCATCTTATGTAGCTTTCACCGACACAGAGCGGCTGATCGGAGATGCTGCCAAAAATCAAGTTGCCATGAATCCCACCAACACAGTTTTCGATGCAAAGCGTCTTATTGGAAGGAGATTCTCCGATCCAACAGTCCAGAATGACATGAAGTTGTGGCCCTTCAAAGTCATTTCTGGGCCAGCGGAGAAGCCTATGATTGTTGTTACTTACAAAGGAGAAGAAAAGCAATTCGCTGCAGAGGAAATTTCTTCGATGGTTCTGACTAAAATGAAAGAGATTGCTGAAGCGTATCTTGGAACCACCATCAAGAATGCTGTTGTTACAGTCCCTGCATATTTCAATGACTCTCAGAGGCAGGCTACAAAGGATGCTGGCGTCATTTCTGGACTAAATGTGATGAGAATCATCAACGAACCAACTGCAGCTGCAATTGCTTATGGGCTGGACAAGAAGGCTAGCTCTGTTGGTGAGAAAAATGTTTTGATTTTTGATCTAGGAGGGGGGACTTTTGATGTTTCTCTATTAACTATTGAAGAGGGTATCTTTGAGGTCAAGGCCACGGCAGGAGATACCCATTTGGGTGGTGAAGACTTTGATAATCGGTTAGTTAACCATTTTACTCAGGAATTTAAAAGAAAATATAAGAAAGATCTCGGTAGCAGTGCAAGAGCCCTTAGGAGGTTGAGAACAGCCTGTGAAAGGGCTAAGAGAACGTTGTCTTCCACTGCTCAGACTACCATTGAGATTGATTCTTTGTACGAAGGAATTGATTTTTACTCCACCATTACTAGGGCTAGATTTGAGGAGCTCAACATGGATCTGTTTAGGAAATGCATGGAGCCTGTTGAGAAGTGTTTGAGGGATGCCAAGATGGATAAGAGCAGTGTTCATGATGTTGTGCTTGTGGGAGGATCTACCCGTATCCCTAAAGTGCAGCAATTGTTGCAGGATTTCTTCAATGGAAAGGAGCTCTGCAAGAGTATCAATCCCGATGAAGCTGTCGCTTATGGTGCTGCTGTTCAAGCTGCAATTCTAAGTGGAGAAGGAAATGAGAAGGTGCAAGACCTTTTGCTTCTTGACGTTACTCCCCTGTCACTAGGATTGGAAACTGCGGGAGGAGTGATGACTGTTTTGATCCCGAGGAACACAACGATTCCTACGAAAAAAGAACAAGTCTTCTCCACATACTCTGACAATCAGCCTGGTGTTTTGATCCAAGTATTTGAAGGTGAAAGAGCAAGAACTAAGGACAACAATCTTTTGGGTAAGTTTGAGTTGTCTGGTATCCCTCCTGCTCCAAGGGGTGTGCCTCAGATCACTGTTTGCTTTGACATTGATGCCAATGGTATCCTGxxxxxxxxxxxxxxxxxxAAGATCACCATTACCAATGACAAGGGCAGGCTAAGCAAGGATGAGATAGAAAAGATGGTTCAGGATGCAGAGAAATACAAGGCCGAGGATGAAGAACTGAAATTGAAGGTAGAAGCCAAAAATTCTCTAGAGAACTATGCATACAACATGAGGAATACCATCAAAGATGATAAGATTGCAGGAAAGTTGGACCCTGCTGACAAGAAGAAAATCGAGGATGCAGTTGATGGAATTATCAGCTGGTTGGATGGAAACCAGTTGGCCGAGAAGGAAGAGTTTGAGGACAAATTGAAAGAGCTGGAGTCTACTTGCAATCCTATCATTGCAAAAATGTACCAGGGTGAAGGTGGTGCGGGATTTCCAGGTGCTGATGCTTTTGGTGGAGCTTCTGGAGCTGGCGACGAGGGTGCAAGTGGCCCTGGTCCCAAGATCGAGGAAGTGGACTAG___ATATATTTCTTCAGCACCTTCTATGTGTTTTTTTGTTATTTCATTTGAATTGCTCGGGCTGGAATTTTAGAACTTTAAAATGTGGCCATTTTTGTCAGCCTCAGGATTGTTTCTCTTTGTAGTAGGTATGTAGTATTTGAACTCTCTTATGCAGAGAGTCGTCAAACCATATATTCAACTGGAAGTGTTTGTACATT

Fln Alignment:

Contig12092___MAKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPTVQNDMKLWPFKVISGPAEKPMIVVTYKGEEKQFAAEEISSMVLTKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFTQEFKRKYKKDLGXXXXXXXXXRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXAILSGEGNEKVQDXXXXXXXXXXXXLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAKxxxTSLQNKITITNDKGRLSKDEIEKMVQDAEKYKAEDEELKLKVEAKNSLENYAYNMRNTIKDDKIAGKLDPADKKKIEDAVDGIISWLDGNQXXXXXXXXXXXXXXESTCNPIIAKMYQXXXXXXXXXXXXXXXXXXXXXXXXXXXGPKIEEVD
B8LRY5__________________MAKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPTVQNDMKLWPFKVISGPAEKPMIVVSYKGEDKQFAAEEISSMVLTKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFTQEFKRKYKKDLSSSARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTIHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAExxxTGQKNKITITNDKGRLSKDEIEKMVQDAEKYKAEDEELKLKVEAKNSLENYAYNMRNTIRDDKIAGKLDPADKKKIEDAVDGIISWLDGNQLAEKEEFEDKLKELESTCNPIIAKMYQGEGGAGFPGADAFGGASGAGDESASGPGPKIEEVD

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
266	9	90			0.999872
512	12			87	0.992554
514	12			87	0.992554
515		87		12	0.992554
1572	3		96		0.99245
1600	3			94	0.941977
1601	3			96	0.990463
1602		96		3	0.990463
1640	3	94		1	0.947029
1643	1		94	3	0.941977
1644		94	1	3	0.941977
1770		4		95	0.995482
1824	5		94		0.998397
1855			89	7	0.998606
1858	7	92			0.999664
1861		92		7	0.999602
1862	92			7	0.999602
2049		96		3	0.989722
2050		96	3		0.989722
2051	96			3	0.989722
2090		3	96		0.991164
2110	95			4	0.995482
2123	4	93		2	0.985381
2125	4	95			0.997218
2137	6	93			0.999264
2140	93			6	0.999364
2141	93			6	0.999364
2177	86			13	0.999973
2192			92	8	0.999718
2276		25	50		0.995533
2277	50	25			0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain