SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12087

Length: 1681 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene12087 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15405	141/145
SustainPine v2.0	sp_v2.0_unigene80830	2/145

Source	Descriptions	Term	Type	Identity
AutoFact	Reticulon domain containing protein	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	24 kda seed maturation protein	-	-	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Reticulon	IPR003388	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPJ1

Fln msg:

Fln protein: MGEHPEEAASFLESVLEKVTEKLPGHDSSSSDSDDEKSKKPQPSSIASSIKRLFGREKPVHSLFGGGKSADVILWRNKQTSAGVLVGATVIWLLFEWLGYHLLTLICHALILGLTILFVWSNASAFINKQPVRIPQISFSEQLFQDVASAVRFEINRLCAFIHDVASGRDLKKFLMVVAGLWLLSVVGSWTNFLTLFYVAFVFAHTVPVLYEKYEDQVDALAFKAMDEAKKHYRTFDAKVLSKIPRGPLKDKKF*

Protein Length: 256

Fln nts: AACAGGGTTTGGTGAGACATCGCACGGCTGAGATTAAGCCAGCGCGCTCAATCAACGGCCTCGTTGAATCTTATGCCCCTGTGCAAAGTATAGCTCCAGAATAGCCTTGTAAATTCATTGGAACCTGGTGGAAAAGCTGTGTAGGAGGAAATCTTGAAGAGAGTGCCATTGTAGATTAAAACGGCCATCGCTGGAGTTTGGCCCAAGTAAACCGAAGGCAGAAGATCCCCCGAGGCGTTGAATCCTGCAAAATCATCGTCGTATCTCTTTAGGGCTACTTGAAGCCGAGGGACGCTAAGTCTCTGTAACCATCCATTAATTGTGTGGGTCGGAGAGGTTTATTAGTCGAA_-_ATGGGAGAGCATCCAGAGGAGGCAGCGTCTTTTCTGGAGAGTGTGCTGGAGAAGGTCACCGAAAAGCTTCCCGGGCATGACTCCTCTTCTTCCGATTCGGATGATGAGAAATCCAAAAAACCCCAGCCGTCTTCAATTGCATCTTCAATAAAACGTCTCTTTGGCCGCGAGAAGCCCGTCCATTCGCTATTCGGAGGAGGCAAATCTGCGGATGTAATACTATGGAGGAACAAGCAAACCTCAGCAGGTGTTCTTGTGGGTGCTACTGTCATCTGGCTCCTATTTGAGTGGCTTGGTTATCATCTATTGACACTTATTTGCCATGCTCTCATACTTGGCCTCACCATCTTGTTCGTCTGGTCCAACGCATCAGCCTTTATTAACAAACAACCGGTGCGTATCCCTCAGATATCATTTTCTGAACAACTATTTCAGGATGTCGCTTCTGCTGTCAGATTTGAAATCAACCGCTTGTGTGCTTTTATACATGATGTTGCATCTGGGAGAGATTTGAAAAAGTTTCTTATGGTTGTGGCAGGTCTCTGGCTTCTTTCTGTGGTTGGCAGCTGGACTAATTTTTTGACTCTCTTCTATGTTGCATTTGTTTTTGCGCATACAGTGCCTGTGCTTTATGAAAAATATGAAGATCAGGTTGATGCACTTGCATTCAAGGCAATGGATGAAGCTAAGAAGCATTACAGGACTTTTGATGCCAAAGTGTTGAGCAAGATTCCAAGAGGCCCACTGAAAGACAAGAAATTCTAG___ATGCTCTCTTTTAGTTATTATTTATGGTGGTGGTAGAGTGACTACTTTTTGCTAGTTTTGCTAATTTTCCTTTTTTGCGCTTAAGCCTGCCTAGAAATAGTTGCCATGAAGTGTGGCATTTTGCTGTTTGATTTGGTTCCAATCTACTTTTGAATTTGATCAGCTGCATGATCTCAGTTTTCTGTCAGGTCCTCTATTTCCTCGGACATGCCCTCTGTATTTAATTGTTCAGCATGGGGCAGTTTTTATTGTTTAATTTCCTTGAAAATCCCCGACTTATTTTTGTCAGCATGATATGATCTTTTACATTCAATTGTGTAAGCAGTCAACAGAATTGCAATGCTTACGCAATTAGAATTATAGCATTTGCTTCGGCATCATTGCATTTTACACTAATGCTGCTGTTATATGTACCACGTAATAACCATGGACACAATGAGAGGTTGGAATGCTTTGATTTTGAGTTTGCTGATCCTGCATGTATGAACCATCGATGTGTGCTTTTGATGTTTAATACTAAAAGCTTGTGAAAAATAGACTGACTTCTCACATTTATGTTTCTCACA

Fln Alignment:

Contig12087___MGEHPEEAASFLESVLEKVTEKLPGHXXXXXXXXXXXXXXXXXXS-----IASSIKRLFGREKPVHSLFGGGKSADVILWRNKQTSAGVLVGATVIWLLFEWLGYHLLTLICHALILGLTILFVWSNASAFINKQPVRIPQISFSEQLFQDVASAVRFEINRLCAFIHDVASGRDLKKFLMVVAGLWLLSVVGSWTNFLTLFYVAFVFAHTVPVLYEKYEDQVDALAFKAMDEAKKHYRTFDAKVLSKIPRGPLKDKKF
B8LPJ1__________________MGEHPEEAASFLDSVMEKVAEKLPGHDSSSSDSDDEKSKKPESKKPEPSSISSSVKRLFGREKPVHTLFGGGKSADVILWRNKQTSAGVLAGATVMWLLFEWLGYYLLTLICHVLILGITILFVWSNASAFINKQPVRIPQISFSEQLFQDVASALRFEINRLFTVIHDVASGRDLKKFLMVVAGLWILSVIGSWANFLTLFYVAFVFAHTVPVLYEKYEDQVDAFTFKAMDEAKKHYGTFDAKVLSKIPRGPLKDKKF

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
665	8	91			0.999766
742		84		15	0.999986
762	10			90	0.90298
763		10		90	0.90298
765			90	10	0.90298
770	11		88		0.923564
773			87	12	0.992554
802	14	85			0.993533
805		85		14	0.993533
806	85			14	0.993533
837		25	75		0.996473
840			75	25	0.996473
1095	5		92	2	0.992495
1498	18	9	72		0.999994
1548		83		16	0.994512
1549	83			16	0.994512
1603			66	33	0.997452
1604		66	33		0.997452
1605	33			66	0.997452
1608			66	33	0.997452
1609			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain