SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12081

Length: 1034 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene12081 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12679	11/56
SustainPine v2.0	sp_v2.0_unigene15863	40/56
SustainPine v2.0	sp_v2.0_unigene15972	2/56
SustainPine v2.0	sp_v2.0_unigene60402	3/56

Source	Descriptions	Term	Type	Identity
AutoFact	Cysteine proteinase inhibitor n=1 Tax=Elaeis guineensis RepID=B3TLW7_ELAGV	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	cysteine proteinase inhibitor	-	-	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteinase inhibitor I25, cystatin	IPR000010	-	0.0	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMW5

Fln msg:

Fln protein: MQSRRQTNVFGVFALCLIAIGISRSRGVAAMGTLGGLRDVKDFQNSIETLDLGRFAVDEHNKQQNGDVSFRRVVAAKEQVVAGTMYHLTIEAEDGDKPKLYTAKVWVKPWENFKSLQEFKPVEQPSISRADLGVKQVHAEGLGWRTVPVHDPVVQEAAQHAVKNIQQRSNSIATYELQEVLSAKAEIIDASSKVDLHLKTKRGSKVEEHKVEMHCNPDGKWILRSHLT*

Protein Length: 230

Fln nts: AGTAGGTATCAACGCAGAGTACGCGGGGAGATTGAATCCATAAATACGAGGAGGAAGCAGAGGGTGGAAGG_-_ATGCAGAGCAGAAGGCAGACAAACGTTTTCGGTGTATTTGCGTTGTGTTTGATTGCAATTGGTATCAGTAGGAGCCGGGGGGTAGCGGCCATGGGAACTCTCGGAGGTTTACGCGATGTGAAAGATTTTCAGAACTCAATAGAGACGCTCGATCTTGGGCGCTTTGCCGTTGATGAACACAACAAGCAGCAGAATGGCGATGTATCGTTTCGTCGAGTGGTGGCGGCAAAGGAGCAAGTTGTAGCGGGGACTATGTATCATCTGACCATAGAGGCCGAGGACGGTGATAAGCCCAAGCTGTACACAGCCAAGGTGTGGGTCAAACCCTGGGAGAATTTCAAGAGTTTGCAGGAATTTAAGCCTGTGGAGCAACCCTCTATTTCCAGGGCTGACCTTGGCGTCAAGCAAGTGCATGCCGAAGGGTTAGGCTGGCGCACAGTCCCAGTGCATGACCCTGTTGTTCAAGAAGCAGCTCAACATGCTGTGAAGAACATACAACAAAGGTCCAACTCTATAGCAACTTATGAACTGCAGGAGGTCCTTTCAGCAAAGGCTGAGATAATTGATGCCTCTTCCAAGGTGGATTTACATTTGAAGACTAAGAGGGGAAGTAAGGTTGAAGAGCACAAGGTTGAAATGCATTGCAATCCTGATGGTAAATGGATATTAAGATCACATTTAACATGA___TGTAGGACAGTGATCTATAGTTTATAAAGTTTGTATTATGTATATTTATGGTTGTTAAACAATATTTGTATTTATGAAATAATGCTCGCTGGCGTTAGCTGGCATCACTTTATTCCCCACCAGAGGATTCGAGATCTTTTTACTGGTTAAATGATTTGACCTCTCAACACTTACTGAAGTTGTGAATTTGGGCTATGATCTACTTCGTAGCTGTCTTACTGTCAAATAGTGTATAATGTTAACAATGATTTTTATACGTCAATAATCAGATACATG

Fln Alignment:

Contig12081___MQSRRQTNVFGVFALCLIAIG---ISRSRGVAAMGTLGGLRDVKDFQNSIETLDLGRFAVDEHNKQQNGDVSFRRVVAAKEQVVAGTMYHLTIEAEDGDKPKLYTAKVWVKPWENFKSLQEFKPVEQPSISRADLGVKQVHAEGLGWRTVPVHDPVVQEAAQHAVKNIQQRSNSIATYELQEVLSAKAEIIDASSKVDLHLKTKRGSKVEEHKVEMHCNPDGKWILRSHLT
B8LMW5__________________MQSRRQVDSFGVFVLCVIAIGVLGISSSRGAAAMGTLGGLRDVKDFQNSIETLDLGRFAVDEHNKQQNGDISFRRVVAAQEQVVAGTMYHLTIEAEDGDHPKLYKAKVWVKPWENFKRLEDFKPVEQPSVSRADLGVKQVHAEGLGWRTVPVHDPVVQEAAQHAVKNIQQQSNSLAAYELQEVLSAKAEVVDASSKVDLHLKTKRGSKVEEHKVEMHCNPDGKWILRSRLT

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
334	11	66		22	0.999999
335		88		11	0.923564
336			11	88	0.923564
354	10	90			0.90298
355	10			90	0.90298
357		90	10		0.90298
358		90		10	0.90298
720	12		87		0.992554
721		87		12	0.992554
814	12	87			0.992554
815		12	87		0.992554
817			87	12	0.992554
818		87		12	0.992554
861	16	83			0.994512
865			83	16	0.994512
866	83			16	0.994512
957	33		66		0.997452
959	33			66	0.997452
960		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain