SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12077

Length: 1417 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene12077 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15554	95/105
SustainPine v2.0	sp_v2.0_unigene16947	9/105

Source	Descriptions	Term	Type	Identity
AutoFact	Triosephosphate isomerase n=2 Tax=Picea sitchensis RepID=A9NUV2_PICSI	-	-	92%
FL-Next	sp=Triosephosphate isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	triosephosphate isomerase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Triose-phosphate isomerase.	EC:5.3.1.1	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	87%
Blast2go	Fructose and mannose metabolism	00051	87%
Blast2go	Inositol phosphate metabolism	00562	87%
Blast2go	Carbon fixation in photosynthetic organisms	00710	87%
Blast2go	Metabolic pathways	01100	87%
Blast2go	Biosynthesis of secondary metabolites	01110	87%

Source	GOs	Term	Type	Identity
Blast2go	multicellular organism reproduction	GO:0032504	Biological Process	87%
Blast2go	primary root development	GO:0080022	Biological Process	87%
Blast2go	triglyceride mobilization	GO:0006642	Biological Process	87%
Blast2go	glycerol catabolic process	GO:0019563	Biological Process	87%
Blast2go	chloroplast organization	GO:0009658	Biological Process	87%
Blast2go	glyceraldehyde-3-phosphate biosynthetic process	GO:0046166	Biological Process	87%
Blast2go	triose-phosphate isomerase activity	GO:0004807	Molecular Function	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	87%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	87%
Blast2go	thylakoid	GO:0009579	Cellular Component	87%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	87%
Blast2go	apoplast	GO:0048046	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldolase-type TIM barrel	IPR013785	-	0.0	-
Sma3	Triosephosphate isomerase	IPR000652	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LM02

Fln msg:

Fln protein: MAAMAISSSSATVHIGCRKSVFVSNASSSVRSELAGLRRLDSVFNKGTRHCLFAQVQRNAQAVGNGCRGVVTMAGTGKFFVGGNWKCNGTKDSIAKLVTELNNAKLEDDVDIVVAPPFVYIDQVKSSLIDRIEISAQNSWVGKGGAFTGEISVEQLNDIGCKWVIHGHSERRHVIGEDNQFIGKKSAYAVMQGLKVIACIGEKLEEREAGKTFDVCYEQLKAFADNVPSWDDVVIAYEPVWAIGTGKVASPQQAQEVHVAVREWLSKNVSAKVASQTRIIYGGSVNGGNCVELAKQEDIDGFLVGGASLKGPEFATICNSVTAKKVAA*

Protein Length: 330

Fln nts: GGGTCAACACCAGCCAGGAGTAGTTAAGAGTGCCCCGCCTGAAAAGTTTTATTAAAACCCCTCCTGGTTTTCTAAGTTGCATTAAAACACTTCTGGGTTTTCTAATTTGCATCAAAACCCTAGTAGAAGTGGAAGGAAGCCAGTCGGTGACGATTTGAATA_-_ATGGCGGCCATGGCAATCAGCTCCAGCTCTGCGACAGTCCACATTGGTTGCAGGAAGTCTGTTTTCGTCTCCAACGCATCGTCGTCGGTTCGATCTGAGTTGGCTGGATTGCGGCGCCTGGATTCCGTGTTTAATAAGGGTACCAGACATTGCTTATTTGCCCAAGTTCAGAGGAATGCTCAAGCCGTTGGCAATGGCTGTCGTGGAGTTGTCACTATGGCGGGCACTGGGAAGTTCTTCGTTGGGGGCAACTGGAAATGTAATGGTACAAAGGATTCCATTGCAAAGCTTGTTACTGAATTGAACAATGCAAAACTTGAAGATGATGTTGATATTGTTGTAGCGCCTCCATTTGTTTATATTGACCAAGTGAAGAGCTCTTTAATTGATCGTATTGAAATTTCTGCCCAGAATTCATGGGTTGGAAAGGGTGGGGCTTTCACTGGAGAAATCAGTGTTGAACAACTAAACGATATTGGTTGTAAGTGGGTGATTCATGGGCATTCTGAGCGTAGACATGTCATTGGTGAGGATAATCAGTTTATTGGGAAAAAATCTGCATATGCAGTGATGCAGGGTCTGAAAGTGATTGCATGTATAGGGGAAAAGCTAGAAGAACGGGAAGCGGGGAAGACTTTTGATGTCTGTTATGAACAGCTAAAGGCATTTGCCGATAATGTTCCTAGCTGGGATGATGTGGTTATTGCATATGAACCTGTCTGGGCCATTGGTACAGGGAAAGTGGCTTCTCCTCAGCAGGCCCAGGAAGTTCATGTAGCAGTCCGTGAATGGTTGAGCAAGAATGTTTCTGCTAAAGTTGCATCTCAAACTCGAATTATTTATGGGGGTTCTGTAAATGGAGGAAATTGTGTGGAATTGGCGAAACAGGAGGATATTGACGGCTTCCTTGTTGGTGGTGCTTCTTTGAAGGGGCCAGAATTTGCCACTATTTGCAACTCTGTCACTGCAAAGAAGGTGGCTGCTTGA___GATCATTGTAGTTATTCTACTTTATTAACAGCTAGGCTTATTACAAAGAGACATAAAGAAAGTGGCAGAGGGAAGCTTGATATATTCTGTCAATATTACAGCAGACACAATGTTCTCGTTTCAGCATAGTTACTGTATTCTTAGCAGTTATAATAAATACAGGAGAGCTTTGTGAGCCATAGATATCTTTCCTTTCAGTTTTGACACAAACCAATTATTAAAGAGTTGAACAATCTTCACGACTTTCTTTTCCTTTGGATATGCAAGAT

Fln Alignment:

Contig12077___TVHIGCRKSVFVSNASSSVRSELAGLRRLDSVFNKGTRHCLFAQVQRNAQAVGNGCRGVVTMAGTGKFFVGGNWKCNGTKDSIAKLVTELNNAKLEDDVDIVVAPPFVYIDQVKSSLIDRIEISAQNSWVGKGGAFTGEISVEQLNDIGCKWVIHGHSERRHVIGEDNQFIGKKSAYAVMQGLKVIACIGEKLEEREAGKTFDVCYEQLKAFADNVPSWDDVVIAYEPVWAIGTGKVASPQQAQEVHVAVREWLSKNVSAKVASQTRIIYGGSVNGGNCVELAKQEDIDGFLVGGASLKGPEFATICNSVTAKKVAA
B8LM02__________________TVRIGCKKSAFVTNASSSVRSEFAGLRRMDSMFDMGSSHCLFAQMQRNVQAVGNGCRGVVTMAGTGKFFVGGNWKCNGTKDSISKLVTELNSAKLEDDVDIVVAPPFVYIDQVKSSLTDRIEISAQNAWVGKGGAFTGEISVEQLKDIGCKWVIHGHSERRHVIGEDSQFIGKKSAYALTQGLKVIACIGEKLEEREAGKTFDVCYEQLKAFADNVPSWDDVVIAYEPVWAIGTGKVASPQQAQEVHVAVREWLSKNVSAEVASQTRIIYGGSVNGGNSAELAKQEDIDGFLVGGASLKGPEFASICNSVTAKKVAA

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
620	88	11			0.923564
622			88	11	0.923564
672	16			83	0.999991
721	11			88	0.999937
723	88		11		0.999937
1090	83	16			0.994512
1091	16	83			0.994512
1126	75	25			0.996473
1278		11	88		0.923564
1280			11	88	0.923564
1336	80			20	0.995493
1338	20			80	0.995493
1342	80			20	0.995493
1343		80		20	0.995493
1345		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain