SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12070

Length: 2845 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene12070
GAATCTTTTGTGTTGAGAAACCCTAGCTTTCTCTTGTTTGTTTCTTCGGTCTCTAGTGCTTGCTAGTTTCTTCCAGTGGTTGTGGTTGCCTCTGTTAACTGCAGAAGCTCAGCGCATCTAAGGAGTAGGAGGTCCGAGAACTCGATCTCTAAGCCTCTCAATCTCAAAATGGCTCCTCGCCCCGCTAAGAAGGCCGCCGCAGCAAACCCTACTCCAAAGAAGGAGAAAGCTGGAGGTGCTAAGTCGAAGCAGACAACGCCAAAGGCCGATTCAGTGCCGGCTGTTACTGTTGAAGCCGAAGAGCCGAAGCAGTCACCAGCCAAACCTAATGGAGCAGAGGCGGCACCTGACGCCGACATAGTGATGGAGGACAATGCCAAACAGGAAGCTGAAGAAGACACTAAGGATGAAAAGTTAGATCTAGATGACAATGAGGATCAGGAGGATGAGACAGAAGAAAATCAAGATGGAGATGGCCAAGAAGGTGACGAGGAGGATGCAAAAGGTGAAGGAGAGGAGGCCGAGGCCCAGGACGATGGAGACGAGGGAGATTCACAAGTGGAGGAGGCCGAAGGTGCAGAGGATGAAGAGCACGAGGGTGTTGGAGAAGATGATGAACGTGAAATAAATGACATTCCTGCCCCCTTAAAGGACAGGCAGAAGCAAAAACAATTTGAAATTTTTGTAGGTGGCCTTGATAAGGAAGCTGATGAAGAGGATTTGAAGAAAGTTTTTGGTGCGGTGGGTGAAATTAAGGAAATACGAATGTCCAAGAATCCTACGTCTCAGAAGAACAGGGGATTTGCTTTCATACGTTATGAGACTATCGAAGAAGCAAAACGTGCCTTAACTGAACTGAAGAATGCTCAGGTTAAGGATAAGCGTTGTGGTGTGTCACCAAGCCAGGATAATAACACTCTTTACATGGGAAATATTTGCAAGACATGGACAAAGGATGTTGTGAGAGAAAAGCTGAATGAGTATGGAATTGAAAACATTGAAGAAATGTCCTTAATGGATGATCCAAAAAATGAGGGGCAAAATCGAGGCTTTGCATTCTTAGAGTTCACAAATCATCAATGTGCTATGACTGCGTACAAGCGCCTCCAAAAACGAGATGTTGTGTTAGGTTGTGACAGGAGTGCAAAGGTTGCGTTTGCTGAGTCTTCCATCCAGCCTGATGAGGAACAAATGGCACAGGTTAAGTCTGTTTTCCTTGATGGATTGCCCGCATCTTGGGATGAAGAGCGAGTTAAAGAGGAACTCAAGAAATTTGGTCAAATTGAGAAAGTACAATTATCGAAGAACATGGCCTCTGCCAAGCGTAAAGACTTTGGTTTTGTACATTTTGCTACTCGTGAAGAAGCTCAGGCTTGTGTTGATAGTCTCACTAACAGCGAGATTGGAGAGGAAGATAGTAAGGTAAAGGCTAATATTGCAAAGCCGCAACATAAGAGTAGGTTAGTTAAGCAAGGTGTTCGTGGAGGATATCGGGTTGGAGAAGTTAAAGCTGAAGGTAATAAGGGAAAGAAGTCTCGCAAAATGAGGAATCGTGGTCGTAATGATCGAAATCGTGGACGTGGACCTAAGAGTGACAAGAAAAAGGAGAAAACCACTGCACCTACAGAGAAGCAAGCTGATCCAAAACGTGCCACAAAGAACGATAATGTACCAAAGAAGAAAGGTGATCGTGATCAAGGTCCTAGGAAATCTAATGTTAGGGACCAGAATAAATCTCGGGGATCGTCAAGAACTGATACACGCAGGATCCCGTATGCTAATGATAGATATAGTCGCCATCTGGAACGTGTGCATAGTTATTTGGATGCGCCTAGCCGTCCTTATGGTGGAGTTTCTGGTTCAAAACGTCCATATTCTGCTCTGGATGATGTTCCAAGGTATGCAGAACCAGATTTAAGGCACTCGAGGGCACGCCTAGACTATGACGTTAGTGCTGGTGCTTCGCTTTATGGAGGCACCGGTTATGGCCGGCTTGGTAGAGCGCCCCAATCAGGTTACAGTGGTCAGCAATCTTATGGCTTATATGACACTCATCAAGCTGGCACACTTGGAGGTGCGGCAGTTGGTGGAATTTACTCTCCGGGCTACGGCACCAGTTCTTTGCCAGGCAGGACTGATATTGGAGGTGGTTCATATTCTTCTCTGTACGAAAGCCGGAGATCAGGCAGTGGATATCTGTTGGGCCGTGGCTCAAGAGGATATTACTAGAATATGAGTTTTTATGACAAGAGGCACTAGTCGGCCTAGGCTGGAGTAGATCTATATGCCTCTAGATCAATTATTTGGGTATCTTATGACCGGGCACAAGGAGAGATTATGCCTTATTGCATGGAGCTTCAGCTATCTGCCTTGAATGGCATCTTTGCCATACGAGATTTTATATCTCATGGCTATGACAGATATCTTAAGATTGCGATAGTAATGCAGTATTAGATTGAACATGTCTGATTTATGATATTAAGGATAGTTCTTTTGGAAGTGAGGGAGAATCTAGAGAAGATTCAACAAACGATTTTTGTTATAAGCTGGGATTTGTGTTAAACCTTCTTCAAAGTTCATTGTTGGATGTAAAGCTTTAAATCTTCTCGATGAATTGAGAACCAGCTTGAACTTTTTAAATTTAGCTCTTTGGGCATCCTGTTTTAAATATAATGGATGTTCGCTTGATGCCCTAAATGGAGCTTTAAGACGCTCGAGTGGCTTTCCTGAACGTACACGTTTTAGCCACTTCTAAGAAGAAAATTTTTGGGCATATAATGGTGAACTGATTTTTGAAGCTGGCAAGTTGTCTTCTCAGTTACATAATAGATATGAGATTTGATTT

Ace file of the UniGene biog3_v1.0_unigene12070 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15537	410/440
SustainPine v2.0	sp_v2.0_unigene16420	27/440
SustainPine v2.0	sp_v2.0_unigene24050	1/440
SustainPine v2.0	sp_v2.0_unigene61662	1/440
SustainPine v2.0	sp_v2.0_unigene80863	1/440

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SM13_VITVI	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	rna binding	-	-	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMW5

Fln msg: your sequence is longer than subject: 687 - 219

Fln protein: MAPRPAKKAAAANPTPKKEKAGGAKSKQTTPKADSVPAVTVEAEEPKQSPAKPNGAEAAPDADIVMEDNAKQEAEEDTKDEKLDLDDNEDQEDETEENQDGDGQEGDEEDAKGEGEEAEAQDDGDEGDSQVEEAEGAEDEEHEGVGEDDEREINDIPAPLKDRQKQKQFEIFVGGLDKEADEEDLKKVFGAVGEIKEIRMSKNPTSQKNRGFAFIRYETIEEAKRALTELKNAQVKDKRCGVSPSQDNNTLYMGNICKTWTKDVVREKLNEYGIENIEEMSLMDDPKNEGQNRGFAFLEFTNHQCAMTAYKRLQKRDVVLGCDRSAKVAFAESSIQPDEEQMAQVKSVFLDGLPASWDEERVKEELKKFGQIEKVQLSKNMASAKRKDFGFVHFATREEAQACVDSLTNSEIGEEDSKVKANIAKPQHKSRLVKQGVRGGYRVGEVKAEGNKGKKSRKMRNRGRNDRNRGRGPKSDKKKEKTTAPTEKQADPKRATKNDNVPKKKGDRDQGPRKSNVRDQNKSRGSSRTDTRRIPYANDRYSRHLERVHSYLDAPSRPYGGVSGSKRPYSALDDVPRYAEPDLRHSRARLDYDVSAGASLYGGTGYGRLGRAPQSGYSGQQSYGLYDTHQAGTLGGAAVGGIYSPGYGTSSLPGRTDIGGGSYSSLYESRRSGSGYLLGRGSRGYY*

Protein Length: 688

Fln nts: GAATCTTTTGTGTTGAGAAACCCTAGCTTTCTCTTGTTTGTTTCTTCGGTCTCTAGTGCTTGCTAGTTTCTTCCAGTGGTTGTGGTTGCCTCTGTTAACTGCAGAAGCTCAGCGCATCTAAGGAGTAGGAGGTCCGAGAACTCGATCTCTAAGCCTCTCAATCTCAAA_-_ATGGCTCCTCGCCCCGCTAAGAAGGCCGCCGCAGCAAACCCTACTCCAAAGAAGGAGAAAGCTGGAGGTGCTAAGTCGAAGCAGACAACGCCAAAGGCCGATTCAGTGCCGGCTGTTACTGTTGAAGCCGAAGAGCCGAAGCAGTCACCAGCCAAACCTAATGGAGCAGAGGCGGCACCTGACGCCGACATAGTGATGGAGGACAATGCCAAACAGGAAGCTGAAGAAGACACTAAGGATGAAAAGTTAGATCTAGATGACAATGAGGATCAGGAGGATGAGACAGAAGAAAATCAAGATGGAGATGGCCAAGAAGGTGACGAGGAGGATGCAAAAGGTGAAGGAGAGGAGGCCGAGGCCCAGGACGATGGAGACGAGGGAGATTCACAAGTGGAGGAGGCCGAAGGTGCAGAGGATGAAGAGCACGAGGGTGTTGGAGAAGATGATGAACGTGAAATAAATGACATTCCTGCCCCCTTAAAGGACAGGCAGAAGCAAAAACAATTTGAAATTTTTGTAGGTGGCCTTGATAAGGAAGCTGATGAAGAGGATTTGAAGAAAGTTTTTGGTGCGGTGGGTGAAATTAAGGAAATACGAATGTCCAAGAATCCTACGTCTCAGAAGAACAGGGGATTTGCTTTCATACGTTATGAGACTATCGAAGAAGCAAAACGTGCCTTAACTGAACTGAAGAATGCTCAGGTTAAGGATAAGCGTTGTGGTGTGTCACCAAGCCAGGATAATAACACTCTTTACATGGGAAATATTTGCAAGACATGGACAAAGGATGTTGTGAGAGAAAAGCTGAATGAGTATGGAATTGAAAACATTGAAGAAATGTCCTTAATGGATGATCCAAAAAATGAGGGGCAAAATCGAGGCTTTGCATTCTTAGAGTTCACAAATCATCAATGTGCTATGACTGCGTACAAGCGCCTCCAAAAACGAGATGTTGTGTTAGGTTGTGACAGGAGTGCAAAGGTTGCGTTTGCTGAGTCTTCCATCCAGCCTGATGAGGAACAAATGGCACAGGTTAAGTCTGTTTTCCTTGATGGATTGCCCGCATCTTGGGATGAAGAGCGAGTTAAAGAGGAACTCAAGAAATTTGGTCAAATTGAGAAAGTACAATTATCGAAGAACATGGCCTCTGCCAAGCGTAAAGACTTTGGTTTTGTACATTTTGCTACTCGTGAAGAAGCTCAGGCTTGTGTTGATAGTCTCACTAACAGCGAGATTGGAGAGGAAGATAGTAAGGTAAAGGCTAATATTGCAAAGCCGCAACATAAGAGTAGGTTAGTTAAGCAAGGTGTTCGTGGAGGATATCGGGTTGGAGAAGTTAAAGCTGAAGGTAATAAGGGAAAGAAGTCTCGCAAAATGAGGAATCGTGGTCGTAATGATCGAAATCGTGGACGTGGACCTAAGAGTGACAAGAAAAAGGAGAAAACCACTGCACCTACAGAGAAGCAAGCTGATCCAAAACGTGCCACAAAGAACGATAATGTACCAAAGAAGAAAGGTGATCGTGATCAAGGTCCTAGGAAATCTAATGTTAGGGACCAGAATAAATCTCGGGGATCGTCAAGAACTGATACACGCAGGATCCCGTATGCTAATGATAGATATAGTCGCCATCTGGAACGTGTGCATAGTTATTTGGATGCGCCTAGCCGTCCTTATGGTGGAGTTTCTGGTTCAAAACGTCCATATTCTGCTCTGGATGATGTTCCAAGGTATGCAGAACCAGATTTAAGGCACTCGAGGGCACGCCTAGACTATGACGTTAGTGCTGGTGCTTCGCTTTATGGAGGCACCGGTTATGGCCGGCTTGGTAGAGCGCCCCAATCAGGTTACAGTGGTCAGCAATCTTATGGCTTATATGACACTCATCAAGCTGGCACACTTGGAGGTGCGGCAGTTGGTGGAATTTACTCTCCGGGCTACGGCACCAGTTCTTTGCCAGGCAGGACTGATATTGGAGGTGGTTCATATTCTTCTCTGTACGAAAGCCGGAGATCAGGCAGTGGATATCTGTTGGGCCGTGGCTCAAGAGGATATTACTAG___AATATGAGTTTTTATGACAAGAGGCACTAGTCGGCCTAGGCTGGAGTAGATCTATATGCCTCTAGATCAATTATTTGGGTATCTTATGACCGGGCACAAGGAGAGATTATGCCTTATTGCATGGAGCTTCAGCTATCTGCCTTGAATGGCATCTTTGCCATACGAGATTTTATATCTCATGGCTATGACAGATATCTTAAGATTGCGATAGTAATGCAGTATTAGATTGAACATGTCTGATTTATGATATTAAGGATAGTTCTTTTGGAAGTGAGGGAGAATCTAGAGAAGATTCAACAAACGATTTTTGTTATAAGCTGGGATTTGTGTTAAACCTTCTTCAAAGTTCATTGTTGGATGTAAAGCTTTAAATCTTCTCGATGAATTGAGAACCAGCTTGAACTTTTTAAATTTAGCTCTTTGGGCATCCTGTTTTAAATATAATGGATGTTCGCTTGATGCCCTAAATGGAGCTTTAAGACGCTCGAGTGGCTTTCCTGAACGTACACGTTTTAGCCACTTCTAAGAAGAAAATTTTTGGGCATATAATGGTGAACTGATTTTTGAAGCTGGCAAGTTGTCTTCTCAGTTACATAATAGATATGAGATTTGATTT

Fln Alignment:

Contig12070___KDRQKQKQFEIFVGGLDKEADEEDLKKVFGAVGEIKEIRMSKNPTSQKNRGFAFIRYETIEEAKRALTELKNAQVKDKRCGVSPSQDNNTLYMGNICKTWTKDVVREKLNEYGIENIEEMSLMDDPKNEGQNRGFAFLEFTNHQCAMTAYKRLQKRDVVLGCDRSAKVAFAESSIQPDEEQMAQV
A9NMW5__________________KERRKRKEFEVFVGGLDKDAAEEDLRKVFSEVGEVVEIRLMMNAQTQKNKGFAFIRYATVEQAKRACTELKNPQVNGKVCGISPSQDNDTLFLGNICKTWTKEALREKLKSFSIDNIEDLTLVEDPENEGMNRGIAFIEFSARSDAMNAYKRLQKRDVVLGTDRTAKVSFAETFVDPDEEVMAQI

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
530	33		66		0.997452
531	33			66	0.997452
532		66		33	0.997452
533	66		33		0.997452
539	25			75	0.996473
541		75		25	0.996473
542		75	25		0.996473
543		75		25	0.996473
558	14		85		0.993533
902	11		88		0.999937
903	11			88	0.999937
904		88		11	0.999937
905	88		11		0.999937
939		12	87		0.999964
940	12		87		0.999964
993		10	90		0.90298
995	90			10	0.90298
996	90			10	0.90298
1076		90		10	0.90298
1077			90	10	0.90298
1233	15		84		0.999986
1234		15		84	0.999986
1266	18	81			0.999994
1270			81	18	0.999994
1399	13		86		0.999973
1432	13			86	0.999973
1435		86	13		0.999973
1650	11			88	0.923564
1651	11		88		0.923564
1654		88		11	0.923564
1675	12		87		0.992554
1676		12	87		0.992554
1679			87	12	0.992554
1752	10			90	0.90298
1754		90		10	0.90298
1756		90		10	0.90298
1773		5		94	0.998894
1774	2		91		0.995912
1787		43		56	1.0
1797	93			6	0.999453
1798	93			6	0.999453
2271	13		86		1.0
2299		88		12	1.0
2827	12		87		0.992554
2828		12	87		0.992554
2829	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain