SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12064

Length: 1657 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene12064

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22232	192/193

Source	Descriptions	Term	Type	Identity
AutoFact	monodehydroascorbate reductase [Mesembryanthemum crystallinum]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	monodehydroascorbate reductase	-	-	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	0.0	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUH7

Fln msg:

Fln protein: MAEKFFKYVIVGGGVAAGYAAREFVKLGLKSGELAIISKEAVAPYERPALSKAYLFPEGAARLPGFHVCVGIGGERQLPEWYSEKGIELILSTEVVKAEIATKTLTSAQGTIFKYDTLIIATGSTVIKLSDFGVQGADAKGIFYLREIDEADALISAIKSKPEGTAVIVGGGYIGLELAAVLSINKYKVKMVYPEPWCMPRLFTADIASFYEGYYKGKGVEIIKGTVATGFGTDEHGHVKIVKLKDGRELEADIVVVGVGGRPLTGLFKGQLEEEKGGIKTDGFFSTSAPDVYAVGDVATFPMKIYGDIRRVEHVDHARKSAAQAVQAIKAKEEGKSIEEYDYLPYFYSRSFDLSWQFYGDNVGEAVIFGDNNPAIPKAKFGSYWIKDGRVVGVFLENGTPEENKAIAKLARLQPLVESKEVLIKEGLGFASKI*

Protein Length: 436

Fln nts: AATGTCTCAATTCTGTTTAAAAGAGTTTTATTTGCTCTCTACTTTCTTCGATCAACAAACAGTAATGAGTTTACCTCGTCTCTCTGTGCAGATTCATTCGATCTAACACTGCA_-_ATGGCTGAAAAGTTTTTTAAGTACGTTATTGTGGGTGGTGGCGTTGCAGCTGGATATGCGGCCAGAGAATTTGTCAAGTTGGGTCTCAAATCTGGAGAGCTTGCGATTATATCGAAAGAGGCTGTAGCTCCATATGAAAGACCTGCACTTAGCAAGGCTTATCTCTTTCCGGAAGGAGCTGCACGACTACCAGGCTTCCATGTCTGCGTTGGGATTGGAGGAGAGAGGCAGCTCCCAGAGTGGTATTCTGAGAAAGGTATAGAGCTGATTCTTAGCACTGAGGTGGTGAAAGCTGAAATTGCCACCAAAACTCTCACTAGTGCACAGGGGACAATTTTCAAATACGACACTTTGATCATTGCAACTGGTTCCACTGTCATCAAGTTATCCGACTTCGGTGTGCAAGGAGCTGATGCCAAGGGCATCTTTTATCTGAGAGAGATTGACGAAGCTGATGCCTTGATATCAGCGATAAAGTCAAAACCAGAAGGCACAGCTGTGATTGTTGGTGGAGGATACATTGGCCTTGAACTGGCTGCGGTTTTAAGCATCAACAAGTATAAAGTTAAAATGGTTTACCCTGAGCCGTGGTGCATGCCTCGTCTTTTCACTGCTGATATAGCTTCTTTCTATGAGGGCTATTATAAAGGAAAGGGTGTGGAAATAATTAAAGGAACAGTGGCCACAGGATTTGGCACGGATGAACACGGACATGTTAAGATAGTAAAGTTGAAGGATGGCAGGGAACTAGAGGCAGACATTGTTGTTGTTGGTGTTGGAGGAAGACCTTTAACAGGCCTTTTCAAAGGACAGCTTGAGGAGGAAAAGGGTGGCATTAAGACGGATGGTTTCTTCAGTACTAGTGCTCCCGATGTTTATGCAGTAGGAGATGTGGCAACTTTCCCAATGAAGATTTATGGGGATATTAGAAGAGTCGAGCATGTTGATCATGCTAGGAAATCAGCAGCACAAGCCGTGCAGGCAATTAAAGCCAAGGAAGAAGGAAAGAGCATTGAAGAATATGATTATCTTCCATATTTCTATTCTCGTTCATTTGATTTGTCATGGCAATTCTATGGAGACAACGTTGGTGAAGCCGTTATTTTTGGTGACAATAACCCTGCTATACCAAAAGCCAAATTTGGTTCATACTGGATAAAAGATGGTAGGGTGGTAGGTGTATTCTTGGAGAATGGTACTCCTGAAGAAAACAAAGCTATCGCCAAATTAGCACGTCTGCAGCCTTTGGTCGAAAGCAAGGAGGTCCTCATAAAGGAAGGGTTGGGATTTGCTTCCAAGATATGA___TAGACTTTCAATTAATTTATTAGCATGATACATTACTGTTGGTCACTCTTGACCTTGGAGATATCCGTTGTTTTACCCACTACCTGAGTTTTGGATTTTTAATAAGGTTTAGCTGCTTCATTAACAAATAAAACTCGCAGCATATTTTTGCTCTTTTTACCCACTGCTAGGGTGGCATCTTATTAAATAGTTCTATAATAGTCTTCTGAATGAATAGCTGTGAATTGCTTGGCTACATT

Fln Alignment:

Contig12064___MAEKFFKXXXXXXXXXXXXXXREFVKLGLKSGELAIISKEAVAPYERPALSKAYLFPEGAARLPGFHVCVGIGGERQLPEWYSEKGIELILSTEVVKAEIATKTLTSAQGTIFKYDTLIIATGSTVIKLSDFGVQGADAKGIFYLREIDEADALISAIKSKPEGTAVIVGGGYIGLELAAVLSINKYKVKMVYPEPWCMPRLFTADIASFYEGYYKGKGVEIIKGTVATGFGTDEHGHVKIVKLKDGRELEADIVVVGVGGRPLTGLFKGQLEEEKGGIKTDGFFSTSAPDVYAVGDVATFPMKIYGDIRRVEHVDHARKSAAQAVQAIKAKEEGKSIEEYDYLPYFYSRSFDLSWQFYGDNVGEAVIFGDNNPAIPKAKFGSYWIKDGRVVGVFLENGTPEENKAIAKLARLQPLVESKEVLIKEGLGFASKI
A9NUH7__________________MAEKFFKYVIVGGGVAAGYAAREFVKLGLKSGELAIISKEAVAPYERPALSKAYLFPEGAARLPGFHVCVGIGGERQLPEWYSEKGIELILSTEVVKAEIASKTLTTAEGTTFKYDTLIIATGSTVIKLSDFGVQGADAKGIFYLREIAEADALVSAIQSKPEGTAVIVGGGYIGLELAAVLRINKYKVKMVYPEPWCMPRLFTADIAAFYEGYYRGKGVEIIKGTVATGFVTDEHENVKIVKLKDGRELEADIVVVGVGGRPLTGLFKGQLEEEKGGIKTDGFFKTSVPDVYAVGDVATFPMKIYGDIRRVEHVDHARKSAAQAVQAIKAKEEGKSFEEYDYLPYFYSRSFDLSWQFYGDNVGEAIIFGDNNPATPKAKFGSYWIKDGRVVGVFLENGTPEENKAIAKVARLKPLVESKEELIKDGLAFASKI

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
687		6	93		0.999264
688	6			93	0.999153
760	90			9	0.999872
1160	10			90	0.90298
1162	10		90		0.90298
1455	15			84	0.999986
1456			84	15	0.999986
1506		12	87		0.992554
1507	14			85	0.993533
1516	16			83	0.994512
1517		16		83	0.994512
1520	83			16	0.994512
1535		20		80	0.995493
1549	66	33			0.997452
1551	66			33	0.997452
1552		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
874	885	TTG TTG TTG TTG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain