SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12059

Length: 919 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene12059

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6730	99/243
SustainPine v2.0	sp_v2.0_unigene15695	1/243
SustainPine v2.0	sp_v2.0_unigene24354	141/243
SustainPine v2.0	sp_v2.0_unigene82863	1/243

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L30 n=1 Tax=Wolffia arrhiza RepID=D1MI90_WOLAR	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	60s ribosomal protein l30	-	-	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glyoxalase/fosfomycin resistance/dioxygenase	IPR004360	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
535	3			96	0.983282
536		3	96		0.983282
538	96			3	0.983282
539			96	3	0.983282
590	2	97			0.998388
591			97	2	0.998388
608	2		97		0.998653
620	2		97		0.998982
622	97			2	0.998982
654	1			84	1.0
655		1		94	0.999876
659	7			92	1.0
667	3	96			0.982166
669	3			96	0.982166
672		96		3	0.984346
699	90			9	1.0
701		7	90	2	0.999998
703			92	7	0.999999
704		90		7	0.999998
708	5		91		0.993509
709		2	89	5	0.979359
711			94	5	0.998744
723	6		80		1.0
724	13	6	80		1.0
725	6			89	0.998304
876	11		88		0.923564
878	11			88	0.923564
881			12	87	0.992554
883	14	85			0.993533
884	28	14	57		1.0
885	14	85			0.993533
886	16			83	0.994512
887	20		80		0.995493
888	20		20	60	0.99255
889	40	60			1.0
891	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain