SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12047

Length: 1099 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene12047 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18669	21/21

Source	Descriptions	Term	Type	Identity
AutoFact	Aspartic proteinase, putative n=1 Tax=Ricinus communis RepID=B9SVA7_RICCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	aspartic proteinase	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Saposin-like type B, 1	IPR007856	-	-
Sma3	Saposin-like type B, 2	IPR008138	-	-
Sma3	Saposin B	IPR008139	-	-
Sma3	Saposin	IPR008373	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Saposin-like	IPR011001	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKS9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 34 aas, your sequence is shorter than subject: 363 - 509

Fln protein: CPLSKCHFSVSCYFHPKYDASKSSTYKTNGKSCEIHYGTGSMSGYLSQDHVKVGNIIVKDQVFTEATHEPGITFLAAKFDGILGLGFQQIAVQNVVPVWYNMVNQNLAKSPVFSFWMNRNADDSEGGEIVFGGVDPKHFTGEHTYVPVTREGYWEFNMGDFLIDGKSTGYCAAGCAAIADSGTSLLAGPSAIVTEINHAIGAEGVVSKSCKTVVSEYGDMIFELLIGQMKPQMICSHIGLCSSGCTVDISMGIASVIEKERGKGPGTCSSNALCAACEMAVVWSQNKLSQNETKVQILDYVSQLCDRLPSPNGQASVDCENLSSMPTVSFTIGNKQFDLSPEQYILRLGEGPSAQCISGFIH*

Protein Length: 364

Fln nts: AATGTCCTTTATCCAAATGCCATTTCTCGGTCTCATGCTATTTTCATCCTAAGTATGATGCAAGCAAATCAAGTACATATAAAACGAATGGCAAATCATGTGAAATTCACTATGGAACTGGTTCAATGTCTGGTTACCTGAGTCAGGATCATGTCAAAGTTGGAAACATCATTGTTAAAGATCAGGTTTTTACTGAGGCTACTCACGAACCGGGTATAACATTCTTAGCTGCGAAGTTTGATGGCATACTCGGCTTGGGCTTTCAGCAAATTGCTGTTCAGAATGTTGTGCCAGTCTGGTATAACATGGTCAATCAAAACCTTGCCAAAAGTCCAGTTTTCTCGTTCTGGATGAACCGAAATGCAGATGACAGTGAAGGAGGAGAGATTGTTTTTGGAGGTGTTGATCCAAAGCACTTTACTGGAGAACACACGTATGTTCCTGTTACACGTGAGGGTTATTGGGAGTTCAACATGGGAGACTTCCTTATTGATGGTAAATCAACAGGTTACTGTGCTGCGGGTTGTGCTGCCATTGCAGATTCTGGAACTTCTTTGTTGGCTGGCCCATCTGCCATTGTGACAGAAATCAACCATGCTATTGGTGCCGAAGGAGTTGTTAGCAAGTCATGCAAAACCGTAGTATCTGAGTATGGGGACATGATATTTGAACTCTTGATAGGACAGATGAAACCTCAAATGATTTGCTCCCACATTGGCTTGTGTTCTTCTGGTTGTACGGTAGATATCAGTATGGGAATAGCTAGTGTAATTGAGAAAGAGCGTGGTAAAGGACCAGGAACTTGCAGCAGTAACGCTTTGTGTGCTGCTTGTGAGATGGCAGTTGTATGGTCTCAGAACAAACTTTCCCAAAATGAAACAAAGGTTCAGATTTTGGACTATGTTAGCCAGCTTTGTGACCGGTTGCCAAGCCCAAATGGACAAGCATCTGTAGATTGTGAAAATTTGTCCAGCATGCCAACTGTTTCATTCACAATTGGAAACAAACAGTTTGACCTATCTCCAGAGCAGTACATTCTTCGACTTGGTGAGGGGCCTTCAGCCCAATGCATCAGTGGCTTCATACATTAGATGTTCCT

Fln Alignment:

Contig12047___PLSKCHFSVSCYFHPKYDASKSSTYKTNGKSCEIHYGTGSMSGYLSQDHVKVGNIIVKDQVFTEATHEPGITFLAAKFDGILGLGFQQIAVQNVVPVWYNMVNQNLAKSPVFSFWMNRNADDSEGGEIVFGGVDPKHFTGEHTYVPVTREGYWEFNMGDFLIDGKSTGYCAAGCAAIADSGTSLLAGPSAIVTEINHAIGAEGVVSKSCKTVVSEYGDMIFELLIGQMKPQMICSHIGLCSSGCTVDISMGIASVIEKERGKGPGTCSSNALCAACEMAVVWSQNKLSQNETKVQILDYVSQLCDRLPSPNGQASVDCENLSSMPTVSFTIGNKQFDLSPEQYILRLGEGPSAQCISGFI
B8LKS9__________________PSTKCYLSIACYFHSKYKASQSSSYCVNGKPFNIQYGSGSVSGYLGQDHVTAGDLVVKDQVFAEVTQEPGLTFLAAKFDGILGLGFQKISVGNVVPVWYNMVNQGLIKEPVFSFWMNRKVGDEEGGEIVFGGVDPNHFKGKHTYVPVTREGYWQFNMGDFLIGGQSTGFCSGGCAAIVDSGTSLLAGPSGIVAQINEAIGASGLASQECKSVVSQYGDLIMELLMAQTNPQKVCSQIGLCLSDGTRDVGMRIASVLEK--GNEATSTSSSGMCAACEMAVVWAKNQIARNASKDQIMTYLNQLCDRLPNPNGQAAVDCNNLSSMPTVSFTIGDRSFDLTPDQYILKVGEGSAAQCISGFM

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
44			66	33	0.997452
48		66		33	0.997452
966			75	25	0.996473
967			75	25	0.996473
1043	33		66		0.997452
1047		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain