SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12036

Length: 492 nt

UniGene Fasta

>biog3_v1.0_unigene12036
CTACAGAGCATCGCGGTGGATTAAGTGGCTGACAATTCCTGGGCAAAACACCCCAGGTGTTCAATTGCCATTGAATTTTCTGATCAGGATTGTATAATAAATCTGAGGGCGCTTTCACTTTACTGTCGGTTTTCTTCTTCCCGACGGCAGAGTATGTCGTCAGAATTGCAGAAATAAGATCTGATTGTTGGAAGTGCAGCTGCAGTCGTCAACTTTGACGGCGATGTCGATGCCATTGGATCAGCATTCCCAATCGTATATTGAAGCTTCCTTGACCCAAGATGAAAGAAGGGAGAGAAAATCAGATGTGGAAAATTCTGAAGATGAACGAAGGAGGACAAAAATTGGAGCCCTGAAAAAGAAGGCACTAAGTGCATCGACAAGGTTCAAGCATTCCTTAAGGAAAGGGAGGAGGAAAGGTGAAAGGAGGGTTATTTCTGTTTCAATTGAAGATGTACGAGATTCTGAGGAGGAGAAAGCCGTCAATGCTTT

Ace file of the UniGene biog3_v1.0_unigene12036

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7911	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphatidylinositol transporter, putative n=1 Tax=Ricinus communis RepID=B9RH84_RICCO	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	63%
Blast2go	sec14 cytosolic factor	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	70%
Blast2go	phosphatidylinositol transporter activity	GO:0008526	Molecular Function	70%
Blast2go	plasma membrane	GO:0005886	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Cellular retinaldehyde binding/alpha-tocopherol transport	IPR001071	-	-
Sma3	CRAL-TRIO domain	IPR001251	-	-
Sma3	Diguanylate phosphodiesterase, EAL domain	IPR001633	-	-
Sma3		IPR008273	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQR7

Fln msg: Distance to subject end: 535 aas, your sequence is shorter than subject: 89 - 621

Fln protein: MSMPLDQHSQSYIEASLTQDERRERKSDVENSEDERRRTKIGALKKKALSASTRFKHSLRKGRRKGERRVISVSIEDVRDSEEEKAVNA

Protein Length: 90

Fln nts: CTACAGAGCATCGCGGTGGATTAAGTGGCTGACAATTCCTGGGCAAAACACCCCAGGTGTTCAATTGCCATTGAATTTTCTGATCAGGATTGTATAATAAATCTGAGGGCGCTTTCACTTTACTGTCGGTTTTCTTCTTCCCGACGGCAGAGTATGTCGTCAGAATTGCAGAAATAAGATCTGATTGTTGGAAGTGCAGCTGCAGTCGTCAACTTTGACGGCG_-_ATGTCGATGCCATTGGATCAGCATTCCCAATCGTATATTGAAGCTTCCTTGACCCAAGATGAAAGAAGGGAGAGAAAATCAGATGTGGAAAATTCTGAAGATGAACGAAGGAGGACAAAAATTGGAGCCCTGAAAAAGAAGGCACTAAGTGCATCGACAAGGTTCAAGCATTCCTTAAGGAAAGGGAGGAGGAAAGGTGAAAGGAGGGTTATTTCTGTTTCAATTGAAGATGTACGAGATTCTGAGGAGGAGAAAGCCGTCAATGCTTT

Fln Alignment:

Contig12036___MSMPLDQHSQSYIEASLTQDERRERKSDVENSEDERRRTKIGALKKKALSASTRFKHSLRKGRRKGERRVISVSIEDVRDSEEEKAVN
B8LQR7__________________MSGPLDRFARPCFEGSSAQDERRERKSDVENSEDERRRTKIGALKKKAINASTKFRHSLKK---RNPRRKVNI-IQDVRDAEEQAAVD

SNPs (tot: 4)

Position	A %	C %	T %	Probability
80		66	33	0.997452
81		33	66	0.997452
89	66	33		0.997452
120		33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain