SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12034

Length: 491 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene12034
AATGTACATTCGATATTGTCTATCACCATTCATATTAAAGAAGCAACTCCAGAGGGTGAATGTCTTATTAAATGTGGGAAACTTAATCTTGTAGATCTGGCTGGTTCTGAAAACATTTCACGTTCGGGTGCTCGAGAGGGCAGAGCAAGGGAGGCAGGAGAAATTAATAAGAGCCTGCTTACTCTTGGACGGGTGATCACTGCCCTGGTAGAGCATTTGGGACACGTGCCTTACAGAGACAGCAAGCTGACAAGATTGTTGCGAGATTCTTTGGGTGGAAAAACGAAGACTTGCATTATTGCCACAGTGTCACCCTCTGTCCATTGCCTTGAAGAAACTCTTAGTACCCTGGATTATGCTCATCGTGCTAAAAATATCAAGAACAAACCAGAGGTCAATCAGAAAATGATGAAGTCTGCCCTTATAAAGGACCTATATGCTACATTAGCAGGCTTAAACAAGAGGTCTATGCTGCACGAGAGAAGAACATT

Ace file of the UniGene biog3_v1.0_unigene12034 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene62860	3/4

Source	Descriptions	Term	Type	Identity
AutoFact	Kinesin, motor region [Medicago truncatula]	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	39%
Blast2go	p-loop containing nucleoside triphosphate hydrolase-like protein	-	-	96%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	96%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	FERM domain	IPR000299	-	-
Sma3	MyTH4 domain	IPR000857	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Ribosome-associated, YjgA	IPR006839	-	-
Sma3	Kinesin-related conserved domain	IPR010544	-	-
Sma3	FERM/acyl-CoA-binding protein, 3-helical bundle	IPR014352	-	-
Sma3	FERM central domain	IPR019748	-	-
Sma3	Band 4.1 domain	IPR019749	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACB2

Fln msg: Distance to subject end: 245 aas, your sequence is shorter than subject: 163 - 509

Fln protein: NVHSILSITIHIKEATPEGECLIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVITALVEHLGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSVHCLEETLSTLDYAHRAKNIKNKPEVNQKMMKSALIKDLYATLAGLNKRSMLHERRT

Protein Length: 164

Fln nts: AATGTACATTCGATATTGTCTATCACCATTCATATTAAAGAAGCAACTCCAGAGGGTGAATGTCTTATTAAATGTGGGAAACTTAATCTTGTAGATCTGGCTGGTTCTGAAAACATTTCACGTTCGGGTGCTCGAGAGGGCAGAGCAAGGGAGGCAGGAGAAATTAATAAGAGCCTGCTTACTCTTGGACGGGTGATCACTGCCCTGGTAGAGCATTTGGGACACGTGCCTTACAGAGACAGCAAGCTGACAAGATTGTTGCGAGATTCTTTGGGTGGAAAAACGAAGACTTGCATTATTGCCACAGTGTCACCCTCTGTCCATTGCCTTGAAGAAACTCTTAGTACCCTGGATTATGCTCATCGTGCTAAAAATATCAAGAACAAACCAGAGGTCAATCAGAAAATGATGAAGTCTGCCCTTATAAAGGACCTATATGCTACATTAGCAGGCTTAAACAAGAGGTCTATGCTGCACGAGAGAAGAACATT

Fln Alignment:

Contig12034___HSILSITIHIKEATPEGECLIKCGKLNLVDLAGSEN-ISRSXXXXXXXXXXXEINKSLLTLGRVITALVEHLGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSVHCLEETLSTLDYAHRAKNIKNKPEVNQKMMKSAL
D5ACB2__________________HAILQLTIKKHGEGKELKGGRTVGKLSFIDLAGSERGADTTDNDRQTRMEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCVSPNSGSCEHTLNTLRYADRVKGLSKSSNLKKDQSASSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain