SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12029

Length: 2265 nt

UniGene Fasta

>biog3_v1.0_unigene12029
AGAGACTATTCTTCGATTCGACATCTATCCTAAACCCTGGAGAAGGATCTCCGGTTTCTAGTGCCGCGGACCCCAGTCCCAAGAAATAAATAGAAAGGTAGACAGTCTTATTCCTCCGCGGTGGACGCATTGATCCTTATATTTCAGATCTGGCAGTGGCTACTGATCTGTAGCTTCCATTGGTAACGCGGATCTTGCTTCAGATCGGCAGCCATTCGCAGCATTTCCGTGGTCTCCTCGGTGGTTCGATCTCATCCCCGGTGCCCTGAAATTTCAGGGCTCCGATGCTTGTGTTTTGAGCGGTGAATTTGAAGTTGCAGTTATCCAGCTATTCTTAACAAGATGATAAGTCCAGGCCCAATTACGGCCGGCCAGGTGTCATTTTTCCTTGGAATAACCCCTGTATTTATAGCATGGATATATTCCGAGATCTTGGAGCACAAGAAACGTCATTATCTTTCTAAAGTTCGTTCAGAGGCAATTATTGGAAATTTGGGTGATGAAGCAACAAAGGAAGGGGAGAGAGATGTATTGCTTGAAGGTGGTCTTCAACCTGCAGCCAGTCCAAAAGCTATGAATTTTTCTGTTAAGTCTCAACTTATCAGGTTCTTTACAATGGATGAAATGTTTTTAATTGAAAACCGATCTACTTTGAGAGTAATGTCTGAATTTGGGGCAATGCTTCTCTATTTTTATATCTGTGACAGAACAGATTTTTTTGGAGAGTCGGAAAAGAGCTATAGCCGGGATCTCTTCCTCTTCCTCTATTTTCTCCTTATCATAGTTTCTGCGATGACATCTCTAAAGAAGCATACTGAAAAGTCTCCAATCACGGGAAAGACTATCCTATATTTGAATAGGCATCAAACTGAAGAATGGAAAGGCTGGATGCAGGTGTTGTTCTTGATGTATCACTATTTTGCAGCAAAAGAAATTTATAATGCAATCCGTATGTTTATTGCTGCATATGTCTGGATGACTGGATTTGGAAATTTTTCTTATTATTATGTACGTAAAGATTTCAGTCTTGCACGGTTCGTACAGATGATGTGGCGCCTCAACTTCCTTGTGATTTTTTGCTGCATTGTTCTAAATAATGACTACATGCTCTATTACATATGTCCAATGCACACACTTTTCACTCTTATGGTATATGGTGCCCTTGGAATCTTCAACAGATACAATGAACAAGGATCAGTAATTGCATTGAAGATTGCAATTTGCTTTCTAGTGGTTATTGTGGTTTGGGAGTTGCCAGGCATGTTTGACCTTGTTTGGAGCCCCTTGACATTTCTTTTGGGTTATTCTGATCCAAACCCAAATAAGCCTAGTTACCCACGTCTGCACGAATGGCATTTCAGATCAGGGCTTGATCGCTATATCTGGATCATTGGAATGATTTATGCATACTATCATCCTACCGTTGAAAGGTGGATGGAAAAATTGGAGGAAATGGAAGGGAAGCTAAGAATGCTAATCAAGGGAATCGTTGTGATGGCCTGTTTAGTGGTTGGATATCTGTGGTATGAACATATATATAGGCTGGACAAGAACACTTATAACAAATATCACCCATATACATCGTGGATCCCGATAACTGTATACATTTGCCTTCGGAATGTGACACAAAAGTTCCGAAACTTTTCTCTAACACTTTTTGCATGGCTTGGAAAAATAACTTTGGAGACATACATTGCTCAATTTCACATCTGGTTGAGAACTGGAACACCTAATGGACAACCTCGATGGTTACTTTGTATTATTCCGGGCTATCCAATGGTTAATTTTATGTTAACCACTGCTGTGTATATCCTGGTAACATATCGTCTCTTTGAGTTGACAAACAAACTAAAATCTACCTTCATTCCAAGTAAAGATGACAAGCGCCTTCTCCATAATACAATGGCAGCTGCTGCATTGTCTCTTTTCTTGTATGGGTCAGCTTGGCTCTTGGTCACTATTCCTAAGATGGCAGGATTATAATATGGAATCTTGGCAAAGCTTGCTATACCTGTGACCTATGGTGGCTTCCTCGGCTCTTGTTTATCTTCTAACATTCACCTTCGCAACTACAGTTTGGGTGAGCCTGCATTGTGGGTTGGTACTACATATATTATTAAATTTTGGGGCCACCTTGGAGTTGTTCAACACAAACAATGACACTCCTGGGCAACTGTATCTGGTGCTGTTGTATACTTTTGTATGTGGAGTTAAGATGATTGAAATGCAGTCTTCTGGAAGGGCCATATCTTAGAAATTGTTAAA

Ace file of the UniGene biog3_v1.0_unigene12029

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24987	54/54

Source	Descriptions	Term	Type	Identity
AutoFact	O-acetyltransferase-like protein [Arabidopsis thaliana] ref\|NP_001031478.1\| O-acetyltransferase-like protein [Arabidopsis thaliana] gb\|AAU05470.1\| At2g34410 [Arabidopsis thaliana] gb\|AAV59284.1\| At2g34410 [Arabidopsis thaliana] dbj\|BAD94920.1\| hypothetica	-	-	72%
FL-Next	tr=AT2G34410 protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	74%
Blast2go	o-acetyltransferase-like protein	-	-	82%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Cas1p 10 TM acyl transferase domain	IPR012419	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: Q66GQ5

Fln msg:

Fln protein: MISPGPITAGQVSFFLGITPVFIAWIYSEILEHKKRHYLSKVRSEAIIGNLGDEATKEGERDVLLEGGLQPAASPKAMNFSVKSQLIRFFTMDEMFLIENRSTLRVMSEFGAMLLYFYICDRTDFFGESEKSYSRDLFLFLYFLLIIVSAMTSLKKHTEKSPITGKTILYLNRHQTEEWKGWMQVLFLMYHYFAAKEIYNAIRMFIAAYVWMTGFGNFSYYYVRKDFSLARFVQMMWRLNFLVIFCCIVLNNDYMLYYICPMHTLFTLMVYGALGIFNRYNEQGSVIALKIAICFLVVIVVWELPGMFDLVWSPLTFLLGYSDPNPNKPSYPRLHEWHFRSGLDRYIWIIGMIYAYYHPTVERWMEKLEEMEGKLRMLIKGIVVMACLVVGYLWYEHIYRLDKNTYNKYHPYTSWIPITVYICLRNVTQKFRNFSLTLFAWLGKITLETYIAQFHIWLRTGTPNGQPRWLLCIIPGYPMVNFMLTTAVYILVTYRLFELTNKLKSTFIPSKDDKRLLHNTMAAAALSLFLYGSAWLLVTIPKMAGL*

Protein Length: 548

Fln nts: AGAGACTATTCTTCGATTCGACATCTATCCTAAACCCTGGAGAAGGATCTCCGGTTTCTAGTGCCGCGGACCCCAGTCCCAAGAAATAAATAGAAAGGTAGACAGTCTTATTCCTCCGCGGTGGACGCATTGATCCTTATATTTCAGATCTGGCAGTGGCTACTGATCTGTAGCTTCCATTGGTAACGCGGATCTTGCTTCAGATCGGCAGCCATTCGCAGCATTTCCGTGGTCTCCTCGGTGGTTCGATCTCATCCCCGGTGCCCTGAAATTTCAGGGCTCCGATGCTTGTGTTTTGAGCGGTGAATTTGAAGTTGCAGTTATCCAGCTATTCTTAACAAG_-_ATGATAAGTCCAGGCCCAATTACGGCCGGCCAGGTGTCATTTTTCCTTGGAATAACCCCTGTATTTATAGCATGGATATATTCCGAGATCTTGGAGCACAAGAAACGTCATTATCTTTCTAAAGTTCGTTCAGAGGCAATTATTGGAAATTTGGGTGATGAAGCAACAAAGGAAGGGGAGAGAGATGTATTGCTTGAAGGTGGTCTTCAACCTGCAGCCAGTCCAAAAGCTATGAATTTTTCTGTTAAGTCTCAACTTATCAGGTTCTTTACAATGGATGAAATGTTTTTAATTGAAAACCGATCTACTTTGAGAGTAATGTCTGAATTTGGGGCAATGCTTCTCTATTTTTATATCTGTGACAGAACAGATTTTTTTGGAGAGTCGGAAAAGAGCTATAGCCGGGATCTCTTCCTCTTCCTCTATTTTCTCCTTATCATAGTTTCTGCGATGACATCTCTAAAGAAGCATACTGAAAAGTCTCCAATCACGGGAAAGACTATCCTATATTTGAATAGGCATCAAACTGAAGAATGGAAAGGCTGGATGCAGGTGTTGTTCTTGATGTATCACTATTTTGCAGCAAAAGAAATTTATAATGCAATCCGTATGTTTATTGCTGCATATGTCTGGATGACTGGATTTGGAAATTTTTCTTATTATTATGTACGTAAAGATTTCAGTCTTGCACGGTTCGTACAGATGATGTGGCGCCTCAACTTCCTTGTGATTTTTTGCTGCATTGTTCTAAATAATGACTACATGCTCTATTACATATGTCCAATGCACACACTTTTCACTCTTATGGTATATGGTGCCCTTGGAATCTTCAACAGATACAATGAACAAGGATCAGTAATTGCATTGAAGATTGCAATTTGCTTTCTAGTGGTTATTGTGGTTTGGGAGTTGCCAGGCATGTTTGACCTTGTTTGGAGCCCCTTGACATTTCTTTTGGGTTATTCTGATCCAAACCCAAATAAGCCTAGTTACCCACGTCTGCACGAATGGCATTTCAGATCAGGGCTTGATCGCTATATCTGGATCATTGGAATGATTTATGCATACTATCATCCTACCGTTGAAAGGTGGATGGAAAAATTGGAGGAAATGGAAGGGAAGCTAAGAATGCTAATCAAGGGAATCGTTGTGATGGCCTGTTTAGTGGTTGGATATCTGTGGTATGAACATATATATAGGCTGGACAAGAACACTTATAACAAATATCACCCATATACATCGTGGATCCCGATAACTGTATACATTTGCCTTCGGAATGTGACACAAAAGTTCCGAAACTTTTCTCTAACACTTTTTGCATGGCTTGGAAAAATAACTTTGGAGACATACATTGCTCAATTTCACATCTGGTTGAGAACTGGAACACCTAATGGACAACCTCGATGGTTACTTTGTATTATTCCGGGCTATCCAATGGTTAATTTTATGTTAACCACTGCTGTGTATATCCTGGTAACATATCGTCTCTTTGAGTTGACAAACAAACTAAAATCTACCTTCATTCCAAGTAAAGATGACAAGCGCCTTCTCCATAATACAATGGCAGCTGCTGCATTGTCTCTTTTCTTGTATGGGTCAGCTTGGCTCTTGGTCACTATTCCTAAGATGGCAGGATTATAA___TATGGAATCTTGGCAAAGCTTGCTATACCTGTGACCTATGGTGGCTTCCTCGGCTCTTGTTTATCTTCTAACATTCACCTTCGCAACTACAGTTTGGGTGAGCCTGCATTGTGGGTTGGTACTACATATATTATTAAATTTTGGGGCCACCTTGGAGTTGTTCAACACAAACAATGACACTCCTGGGCAACTGTATCTGGTGCTGTTGTATACTTTTGTATGTGGAGTTAAGATGATTGAAATGCAGTCTTCTGGAAGGGCCATATCTTAGAAATTGTTAAA

Fln Alignment:

Contig12029___MISPGPITAGQVSFFLGITPVFIAWIYSEILEHKKRHYLSKVRSEAIIGNLGDEATKEGERDVLLEGGLQPAASPKAMNFSVKSQLIRFFTMDEMFLIENRSTLRVMSEFGAMLLYFYICDRTDFFGESEKSYSRDXXXXXXXXXIIVSAMTSLKKHTEKSPITGKTILYLNRHQTEEWKGWMQVLFLMYHYFAAKEIYNAIRMFIAAYVWMTGFGNFSYYYVRKDFSLARFVQMMWRLNFLVIFCCIVLNNDYMLYYICPMHTLFTLMVYGALGIFNRYNEQGSVIALKIAICFLVVIVVWELPGMFDLVWSPLTFLLGYSDPNPNKPSYPRLHEWHFRSGLDRYIWIIGMIYAYYHPTVERWMEKLEEMEGKLRMLIKGIVVMACLVVGYLWYEHIYRLDKNTYNKYHPYTSWIPITVYICLRNVTQKFRNFSLTLFAWLGKITLETYIAQFHIWLRTGTPNGQPRWLLCIIPGYPMVNFMLTTAVYILVTYRLFELTNKLKSTFIPSKDDKRLLHNTMAAAALSLFLYGSAWLLVTIP
Q66GQ5__________________MADSQPITPGQVSFLLGVIPVFIAWIYSEFLEYKRSSLHSKVHSDNNLVELGEVKNKEDEGVVLLEGGLPRSVSTKFYNSPIKTNLIRFLTLEDSFLIENRATLRAMAEFGAILFYFYISDRTSLLGESKKNYNRDLFLFLYCLLIIVSAMTSLKKHNDKSPITGKSILYLNRHQTEEWKGWMQVLFLMYHYFAAAEIYNAIRVFIAAYVWMTGFGNFSYYYIRKDFSLARFTQMMWRLNLFVAFSCIILNNDYMLYYICPMHTLFTLMVYGALGIFSRYNEIPSVMALKIASCFLVVIVMWEIPGVFEIFWSPLTFLLGYTD--PAKPELPLLHEWHFRSGLDRYIWIIGMIYAYFHPTVERWMEKLEECDAKRKMSIKTSIIAISSFVGYLWYEYIYKLDKVTYNKYHPYTSWIPITVYICLRNSTQQLRNFSMTLFAWLGKITLETYISQFHIWLRSNVPNGQPKWLLCIIPEYPMLNFMLVTAIYVLVSHRLFELTNTLKSVFIPTKDDKRLLHNVLAGAAISFCLYLTSLILLQIP

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
258		66		33	0.997452
467		20		80	0.995493
758	25			75	0.996473
759	25	75			0.996473
840	75			25	0.996473
843	16	66			0.988813
845	83		16		0.994512
996			33	66	0.997452
1028			75	25	0.996473
1104	80			20	0.995493
1196			83	16	0.994512
1261	87		12		0.992554
1300	16			83	0.994512
1301		20		20	0.99255
1302	20			20	0.99255
1311	20			80	0.995493
1313		80	20		0.995493
1452	20		80		0.995493
1453		20	80		0.995493
1455			80	20	0.995493
1456			80	20	0.995493
1485		85	14		0.993533
1661	20			80	0.995493
1662		20		80	0.995493
1663	20			80	0.995493
1741			87	12	0.992554
1746	85			14	0.993533
1747		85		14	0.993533
1984	14		85		0.993533
2117	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain