SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12027

Length: 312 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene12027
CATGATAACTATTGAGAACAAGCCCATCAAACTCCAGATCTGGGATACAGCAGGACAAGAGTCTTTTCGGTCAATTACAAGATCTTATTACAGAGGAGCTGCTGGGGCGTTGCTTGTATATGACATAACAAGGAGAGAAACGTTCAATCATCTTGCAACGTGGTTAGAGGACGCACGGCAGCATGCAATTGCAAATATGACAATTATGCTAATTGGAAATAAATCTGACCTATCTCACAGAAGGGCAGTAACTTTTGAGGAAGGGCAACAGTTTGCAAAGAAAAACGGGTTGATATTTATGGAGACTTCTGC

Ace file of the UniGene biog3_v1.0_unigene12027 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10579	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Ras-related protein Rab-2-B n=15 Tax=Magnoliophyta RepID=RAB2B_MAIZE	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	ras-related protein rab-2-a	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	89%
Blast2go	small GTPase mediated signal transduction	GO:0007264	Biological Process	89%
Blast2go	protein transport	GO:0015031	Biological Process	89%
Blast2go	GTP binding	GO:0005525	Molecular Function	89%
Blast2go	protein binding	GO:0005515	Molecular Function	89%
Blast2go	GTPase activity	GO:0003924	Molecular Function	89%
Blast2go	vacuole	GO:0005773	Cellular Component	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	89%
Blast2go	endoplasmic reticulum-Golgi intermediate compartment membrane	GO:0033116	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR013753	-	-
Sma3		IPR015595	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVF5

Fln msg: Distance to subject end: 63 aas, atg_distance in limit (1-15): atg_distance = 1, your sequence is shorter than subject: 103 - 167

Fln protein: MITIENKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLATWLEDARQHAIANMTIMLIGNKSDLSHRRAVTFEEGQQFAKKNGLIFMETS

Protein Length: 104

Fln nts: C_-_ATGATAACTATTGAGAACAAGCCCATCAAACTCCAGATCTGGGATACAGCAGGACAAGAGTCTTTTCGGTCAATTACAAGATCTTATTACAGAGGAGCTGCTGGGGCGTTGCTTGTATATGACATAACAAGGAGAGAAACGTTCAATCATCTTGCAACGTGGTTAGAGGACGCACGGCAGCATGCAATTGCAAATATGACAATTATGCTAATTGGAAATAAATCTGACCTATCTCACAGAAGGGCAGTAACTTTTGAGGAAGGGCAACAGTTTGCAAAGAAAAACGGGTTGATATTTATGGAGACTTCTGC

Fln Alignment:

Contig12027___MITIENKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLATWLEDARQHAIANMTIMLIGNKSDLSHRRAVTFEEGQQFAKKNGLIFMETS
A9NVF5__________________MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLANWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS

SNPs (tot: 3)

Position	A %	G %	T %	Probability
80	20	80		0.995493
83	80	20		0.995493
84		80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain