SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12016

Length: 263 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene12016
CTGCAACTCTGTCAGTGTGCATGTATGCTGCCCCATTGTCCATTATGAAACTTGTAGTGGAGACAAAGAGCGTGGAATACATGCCATTTTTCCTGTCACTCTTTGTATTCCTATGCGGTTTATCTTGGTTTGTTTATGGCATTCTCGGCCGAGATGCATTTATTGGGGTTCCGAATGGAGTAGGAACTGTGTTGGGTGCAGCGCAGCTTGTATTATATTGGATATACAAGGACTCCACGCCAACCAAATCTCTAGACAACATT

Ace file of the UniGene biog3_v1.0_unigene12016 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12947	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Seven-transmembrane-domain protein 1 n=2 Tax=Andropogoneae RepID=B6TVH3_MAIZE	-	-	1.0e-31	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	bidirectional sugar transporter sweet1-like	-	-	4.316e-42	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	transport	GO:0006810	Biological Process	4.316e-42	75%
Blast2go	sugar transmembrane transporter activity	GO:0051119	Molecular Function	4.316e-42	75%
Blast2go	integral to plasma membrane	GO:0005887	Cellular Component	4.316e-42	75%

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	RAG1-activating protein-1-related	IPR004316	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3		IPR018169	-	-
Sma3		IPR018179	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQ39

Fln msg: Distance to subject end: 38 aas, your sequence is shorter than subject: 87 - 260

Fln protein: ATLSVCMYAAPLSIMKLVVETKSVEYMPFFLSLFVFLCGLSWFVYGILGRDAFIGVPNGVGTVLGAAQLVLYWIYKDSTPTKSLDNI

Protein Length: 88

Fln nts: CTGCAACTCTGTCAGTGTGCATGTATGCTGCCCCATTGTCCATTATGAAACTTGTAGTGGAGACAAAGAGCGTGGAATACATGCCATTTTTCCTGTCACTCTTTGTATTCCTATGCGGTTTATCTTGGTTTGTTTATGGCATTCTCGGCCGAGATGCATTTATTGGGGTTCCGAATGGAGTAGGAACTGTGTTGGGTGCAGCGCAGCTTGTATTATATTGGATATACAAGGACTCCACGCCAACCAAATCTCTAGACAACATT

Fln Alignment:

Contig12016___ATLSVCMYAAPLSIMKLVVETKSVEYMPFFLSLFVFLCGLSWFVYGILGRDAFIGVPNGVGTVLGAAQLVLYWIYKD
A9NQ39__________________AIFSICMYASPLSIMRTVIKTKSVKYMPFFLSLCVFLCGTSWFIFGLLGKDPFLAVPNGVGSALGAMQLILYAVYKD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain