SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12001

Length: 258 nt

UniGene Fasta

>biog3_v1.0_unigene12001
ACTGTAAAACACATATGATCATTTATTGTTTAGCAGAAGTCCTATTCTCAGTGTGTATGCAGATATGTCTGTTACTTGCAAGGAATATTATGATCCAAATCGATCAATGCTGGAGCTTGTATTTGCACCTGCACAAGAATGGATTGGTCGCAGTGATGAGGACATTCTTGAAGCTACGCTTAAGGAACTCTCCAAACTATTTCCAGATGAAATTGCAGATGATGGATGTAAAGCAAAGGTTTTAAGATCATGTTGTTA

Ace file of the UniGene biog3_v1.0_unigene12001

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene29624	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Phytoene desaturase n=1 Tax=Diospyros kaki RepID=D1LZY8_DIOKA	-	-	80%
FL-Next	sp=Phytoene dehydrogenase, chloroplastic/chromoplastic; Narcissus pseudonarcissus (Daffodil).	-	-	81%
Blast2go	phytoene desaturase	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	carotene biosynthetic process	GO:0016120	Biological Process	91%
Blast2go	phytoene dehydrogenase activity	GO:0016166	Molecular Function	91%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Flavin amine oxidase	IPR001613	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Amine oxidase	IPR002937	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	AWPM-19-like	IPR008390	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Phytoene desaturase	IPR014102	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q40406

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 78 aas, your sequence is shorter than subject: 85 - 570

Fln protein: L*NTYDHLLFSRSPILSVYADMSVTCKEYYDPNRSMLELVFAPAQEWIGRSDEDILEATLKELSKLFPDEIADDGCKAKVLRSCC

Protein Length: 86

Fln nts: ACTGTAAAACACATATGATCATTTATTGTTTAGCAGAAGTCCTATTCTCAGTGTGTATGCAGATATGTCTGTTACTTGCAAGGAATATTATGATCCAAATCGATCAATGCTGGAGCTTGTATTTGCACCTGCACAAGAATGGATTGGTCGCAGTGATGAGGACATTCTTGAAGCTACGCTTAAGGAACTCTCCAAACTATTTCCAGATGAAATTGCAGATGATGGATGTAAAGCAAAGGTTTTAAGATCATGTTGTTA

Fln Alignment:

Contig12001___NTYDHLLFSRSPILSVYADMSVTCKEYYDPNRSMLELVFAPAQEWIGRSDEDILEATLKELSKLFPDEIADDGCKAKVLR
Q40406__________________NTYDHLLFTRSPLLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWISRSDSEIIERTMKELAKLFPDEIAADQSKAKILK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
39	25		75		0.996473
41		75	25		0.996473
42		75		25	0.996473
261	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain