SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11967

Length: 495 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene11967
AATGTCCTACTATGACAGATATGGAGGAGGGGCTAACGTTGTGGCTCATGGGTACACTAAGGGAGTTGGGCTGGCTGCGGAGATCATTGGCACATTTGTGTTGGTCTACACAGTTTTCTCTGCCACTGATCCCAAGCGCAGTGCCCGTGATTCTCATGTTCCTGTCTTGGCACCTCTGCCTATTGGGTTTGCTGTATTCATGGTACATTTGGCCACCATCCCTATAACTGGTACAGGCATCAATCCTGCGAGGAGTTTTGGAGCGGCTGTGATCTATGGCCACAAGCATTCCTGGGATGATCAATGGATATTCTGGGTAGGTCCTATGGTGGGCGCTGCTGCTGCAGCAGGTTATCATCAGCACATCCTCCGAGCAACTGCCATTAAGGCACTGGGATCCTTCCGTAGTAACCCACAAGTCTAGCTTCATGTTAGGCACAATCGTGAAAATAGAGCCCCACGAAACTGAACTTTTAAGGCTTTCGTGGCTACATT

Ace file of the UniGene biog3_v1.0_unigene11967 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27752	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Probable aquaporin n=4 Tax=Picea RepID=O65045_PICMA	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	aquaporin	-	-	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aquaporin	IPR012269	-	0.0	-
Sma3	Major intrinsic protein	IPR000425	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NK85

Fln msg: your sequence is shorter than subject: 141 - 284

Fln protein: MSYYDRYGGGANVVAHGYTKGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYGHKHSWDDQWIFWVGPMVGAAAAAGYHQHILRATAIKALGSFRSNPQV*

Protein Length: 142

Fln nts: AATGTCCTACTATGACAGATATGGAGGAGGGGCTAACGTTGTGGCTCATGGGTACACTAAGGGAGTTGGGCTGGCTGCGGAGATCATTGGCACATTTGTGTTGGTCTACACAGTTTTCTCTGCCACTGATCCCAAGCGCAGTGCCCGTGATTCTCATGTTCCTGTCTTGGCACCTCTGCCTATTGGGTTTGCTGTATTCATGGTACATTTGGCCACCATCCCTATAACTGGTACAGGCATCAATCCTGCGAGGAGTTTTGGAGCGGCTGTGATCTATGGCCACAAGCATTCCTGGGATGATCAATGGATATTCTGGGTAGGTCCTATGGTGGGCGCTGCTGCTGCAGCAGGTTATCATCAGCACATCCTCCGAGCAACTGCCATTAAGGCACTGGGATCCTTCCGTAGTAACCCACAAGTCTAG___CTTCATGTTAGGCACAATCGTGAAAATAGAGCCCCACGAAACTGAACTTTTAAGGCTTTCGTGGCTACATT

Fln Alignment:

Contig11967___YYDRYGGGANVVAHGYTKGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYGHKHSWDDQWIFWVGPMVXXXXXXGYHQHILRATAIKALGSFRSNPQV
A9NK85__________________YYDRYGGGANVVAHGYTKGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYGHKHSWDDQWIFWVGPMVGAAAAAAYHQHILRATAIKALGSFRSNPQV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
410	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain