SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11952

Length: 1027 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11952

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19719	16/23
SustainPine v2.0	sp_v2.0_unigene61672	4/23
SustainPine v2.0	sp_v2.0_unigene79596	3/23

Source	Descriptions	Term	Type	e value	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] ref\|NP_001184898.1\| uncharacterized protein [Arabidopsis thaliana] gb\|AAC72125.1\| ESTs gb\|H36966, gb\|R65511, gb\|T42324 and gb\|T20569 come from this gene [Arabidopsis thaliana] gb\|AEE27554.1\| uncharacterized p	-	-	5.0e-38	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	uncharacterized protein	-	-	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin system component Cue	IPR003892	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLN7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 412 aas, your sequence is shorter than subject: 323 - 762

Fln protein: CHRNDVDSAVEFILNEVVPNQNDQIADAELDSERGIVDGPITEHDYHSGSEQLAPSSSHLSVCCSISDDDASEVSDEIILTDRRSDSERIVAHLMQTKINEEHASSLLSVNSLTDQETIDSMEKSAFLVSIFSHLPNQSCDENTNETSGSSSQFNSSQSQTRIENKGFSPHLDDMGEIKGDQLSCDEKSLIQFEDGNILEDVNVDKCGSDSKSTEVNLQAIGSAVSSTFVSDTPIEQRPCTDATNVSSYEEANQCTEEVMVRTSESQLNFSVVEGLIKSLNTAESFYKESMDSLPLILTTHDSVGSGGFKNDSTLNVELDTL*

Protein Length: 324

Fln nts: AATGTCACCGCAATGATGTTGATTCAGCTGTGGAATTTATCCTTAATGAGGTGGTTCCTAACCAAAATGACCAAATAGCTGATGCGGAACTTGATAGTGAGCGTGGAATTGTGGATGGTCCAATTACTGAGCATGACTATCATTCAGGTTCTGAGCAGTTGGCACCAAGCTCATCTCATTTATCTGTTTGCTGCTCTATATCTGATGATGATGCGTCTGAGGTGTCTGATGAAATCATATTGACAGATAGAAGATCAGATAGTGAACGCATTGTTGCTCATCTAATGCAAACTAAAATTAATGAAGAACATGCAAGCTCTTTATTGTCAGTTAATTCTTTGACTGACCAGGAAACAATTGATAGCATGGAAAAGAGTGCTTTTCTTGTGTCAATATTTTCACATCTACCTAATCAGTCCTGTGACGAAAACACCAACGAAACCTCTGGTTCATCAAGTCAGTTCAACTCTAGCCAATCTCAAACTAGAATTGAAAACAAAGGATTCAGTCCTCATTTGGATGATATGGGTGAAATTAAAGGTGACCAGCTGTCTTGCGATGAAAAATCTTTAATACAGTTTGAGGATGGGAACATCCTTGAAGATGTCAATGTTGACAAATGTGGCAGCGATTCAAAAAGTACTGAGGTTAACTTGCAGGCAATAGGCTCTGCAGTTAGTAGTACATTTGTTTCAGATACTCCAATAGAACAACGTCCTTGTACTGATGCCACAAATGTTAGCAGTTATGAAGAAGCAAATCAATGCACTGAAGAAGTGATGGTAAGGACAAGTGAGTCCCAACTGAACTTTTCAGTTGTCGAGGGACTAATCAAATCTCTTAATACAGCTGAGTCCTTCTATAAAGAAAGTATGGACAGTCTTCCTCTTATTTTGACAACTCATGATTCTGTTGGCTCGGGTGGGTTCAAAAATGACAGTACTCTGAACGTGGAGCTAGATACATTATGACTCATTTATCAGTGTTGAAGATGGTTCACTTTCGTGCAGTCAGGCTTCCAGCTCCG

Fln Alignment:

Contig11952___HRNDVDSAVEFILNEVVPNQNDQIADAELDSERGIVDGPITEHDYHSGSEQLAPXXXXXXXXXXXXDDDASEVSDEIILTDRRSDSERIVAHLMQTKINEEHASSLLSVNSLTDQETIDSMEKSAFLVSIFSHLPNQSCDENTNETXXXXXXXXXXXXXTRIENKGFSPHLDDMGEIKGDQLSCDEKSLIQFEDGNILEDVNVDKCGSDSKSTEVNLQAIGSAVSSTFVSDTPIEQRPCTDATNVSSYEEANQCTEEVMVRTSESQLNFSVVEGLIKSLNTAESFYKESMDSLPLILTTHDSVGSGGFKNDSTLNVELDT
B8LLN7__________________HRNDVDSAVEFILNEVVPNQNDPIADVELDNKCGTVDGPITEHDCHLGSKESSPTSSHLSDCCSISDDDASEVSDVILLTDRRSVSERGDAHLMQTKINAEHASSSLSVNSLTDQETIDSIEKSVFLASKFSHLPKQSCDENTIQTSSSSCQF----------NKGFSSH--DLGKNKSLRV---VTSLIPSEDGSIIEDVNVDK----SNSTKVNLLATSSAVSEMVDSETAKDQRPCTDATDVSSYEEANQYTERAVVRTIESQLNFSDIEGPTKSINLDESFYKESTDSLALIQTTQDTVGLGGLKNDNTLNVELDT

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
551	25	75			0.996473
552		75		25	0.996473
553	75		25		0.996473
554			75	25	0.996473
637	80			20	0.995493
648	60			40	1.0
672	40		60		1.0
722	25		75		0.996473
724		75		25	0.996473
804	25		75		0.996473
807		75		25	0.996473
861		33	66		0.997452
863			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain