SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11930

Length: 405 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene11930
TTGGAAATGCCTTAATAACCATGTATGCCAAATGTGGGAGCATAGAGGACTCACTAAAAGTGTTTAATAAAATGCATGATCAAGATCGAGATGTTGTTTCATGGAATGCTATGATTGCAGGATTTTCTCAGCATGGACGTGGCAAGGAAGCCCTTCAACTATTTCAACAGATGCAGGAAGCAGGCACAAAGCCAAATGGTATCACCTTTATCGGTGTGCTCTCTGCTTGTAAGAGCATACGTTCGGTCGACGAAGGACGAAGTTACTTTAATTCCATGAGTAAAGACTATGGTATCACTCCAGGCATTGAGCACTGTGTGTGCATGATTGACATTCTTGGTTGTGTTGGATGCATGGATGACACAGAGGATTTTGTCAACCAAATGCCATCATATGAACTACATT

Ace file of the UniGene biog3_v1.0_unigene11930 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19928	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein 78 (Fragment) n=1 Tax=Funaria hygrometrica RepID=F5CAE0_FUNHY	-	-	2.0e-34	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	at1g13410-like protein	-	-	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease P	IPR000100	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	DNA repair protein (XPGC)/yeast Rad	IPR006084	-	-
Sma3	XPG N-terminal	IPR006085	-	-
Sma3	XPG/RAD2 endonuclease	IPR006086	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Helix-hairpin-helix motif, class 2	IPR008918	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB53

Fln msg: STOP codon was not found. Distance to subject end: 10 aas, atg_distance in limit (1-15): atg_distance = 1, your sequence is shorter than subject: 128 - 232

Fln protein: MYAKCGSIEDSLKVFNKMHDQDRDVVSWNAMIAGFSQHGRGKEALQLFQQMQEAGTKPNGITFIGVLSACKSIRSVDEGRSYFNSMSKDYGITPGIEHCVCMIDILGCVGCMDDTEDFVNQMPSYELH

Protein Length: 129

Fln nts: TTGGAAATGCCTTAATAACC_-_ATGTATGCCAAATGTGGGAGCATAGAGGACTCACTAAAAGTGTTTAATAAAATGCATGATCAAGATCGAGATGTTGTTTCATGGAATGCTATGATTGCAGGATTTTCTCAGCATGGACGTGGCAAGGAAGCCCTTCAACTATTTCAACAGATGCAGGAAGCAGGCACAAAGCCAAATGGTATCACCTTTATCGGTGTGCTCTCTGCTTGTAAGAGCATACGTTCGGTCGACGAAGGACGAAGTTACTTTAATTCCATGAGTAAAGACTATGGTATCACTCCAGGCATTGAGCACTGTGTGTGCATGATTGACATTCTTGGTTGTGTTGGATGCATGGATGACACAGAGGATTTTGTCAACCAAATGCCATCATATGAACTACATT

Fln Alignment:

Contig11930___GNALITMYAKCGSIEDSLKVFNKMHDQDRDVVSWNAMIAGFSQHGRGKEALQLFQQMQEAGTKPNGITFIGVLSACKSIRSVDEGRSYFNSMSKDYGITPGIEHCVCMIDILGCVGCMDDTEDFVNQMP
D5AB53__________________GSTLIDMYAKCSSIGDASKVFDGM--STRNVVSWNAMIAAYAIHGCGKQALDLFEQMKHSDTSPNQVTFVGVLSACCHAGLVSEGRQYFNSMSVDYHITPVMEHYCCMVDLLGRTGCLDEAHDFINKMP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain