SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11927

Length: 402 nt

UniGene Fasta

>biog3_v1.0_unigene11927
AATGTGTAGAGAAAGTGGTTGCTGCTTCACAACCTCATATTGAAAAAGTCATTGTCTTCACAACCTCGTATTGAAAAAGTCATTGCTGCTTCACAACCTCATATTGAGAAAGTGACTGAAATTTTGCAACCATACACAAAACCTGTTCGACATACCTATGGAAGATTTCTCACAACTGCAACAACATATCTTCATCAGATTCAAACTGCATTCCAAAAGGATGAAAATCAGCGTAATCGTCCTACTCGAAAGGATGAGATTCACACATGAATGAGCTATTTTCATGAAACAATATGGAAGGATGTCCCTAAGTTTTTGTGCCGTATTGGTACCTTGCCATGAAGTCAATTGGGATCTGTGGACGAGTACCGTATAATGCACCTCTTATACATTTTTTACATT

Ace file of the UniGene biog3_v1.0_unigene11927

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene59620	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	2-alkenal reductase, putative n=1 Tax=Ricinus communis RepID=B9RHR7_RICCO	-	-	3.0e-13	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	phosphoenolpyruvate carboxylase	-	-	2.0666e-14	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoenolpyruvate carboxylase.	EC:4.1.1.31	-	2.0666e-14	70%

Source	KEGGs	Term	e value	Identity
Blast2go	Pyruvate metabolism	00620	2.0666e-14	70%
Blast2go	Methane metabolism	00680	2.0666e-14	70%
Blast2go	Carbon fixation in photosynthetic organisms	00710	2.0666e-14	70%
Blast2go	Carbon fixation pathways in prokaryotes	00720	2.0666e-14	70%
Blast2go	Metabolic pathways	01100	2.0666e-14	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	carbon fixation	GO:0015977	Biological Process	2.0666e-14	70%
Blast2go	phosphoenolpyruvate carboxylase activity	GO:0008964	Molecular Function	2.0666e-14	70%

Source	InterPros	Term	Type	Identity
Sma3		IPR001449	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-
Sma3	Phosphoenolpyruvate carboxylase, active site	IPR018129	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNW6

Fln msg: Separated hits, possible frame ERROR between 333 and 336, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 681 aas, your sequence is shorter than subject: 134 - 963

Fln protein: NV*RKWLLLHNLILKKSLSSQPRIEKVIAASQPHIEKVTEILQPYTKPVRHTYGRFLTTATTYLHQIQTAFQKDENQRNRPTRKDEIHT*MSYFHETIWKDVPKFLCRIGxxAMKSIGICGRVPYNAPLIHFLH

Protein Length: 135

Fln nts: AATGTGTAGAGAAAGTGGTTGCTGCTTCACAACCTCATATTGAAAAAGTCATTGTCTTCACAACCTCGTATTGAAAAAGTCATTGCTGCTTCACAACCTCATATTGAGAAAGTGACTGAAATTTTGCAACCATACACAAAACCTGTTCGACATACCTATGGAAGATTTCTCACAACTGCAACAACATATCTTCATCAGATTCAAACTGCATTCCAAAAGGATGAAAATCAGCGTAATCGTCCTACTCGAAAGGATGAGATTCACACATGAATGAGCTATTTTCATGAAACAATATGGAAGGATGTCCCTAAGTTTTTGTGCCGTATTGGTACxxxTGCCATGAAGTCAATTGGGATCTGTGGACGAGTACCGTATAATGCACCTCTTATACATTTTTTACATT

Fln Alignment:

Contig11927___LHQIQTAFQKDENQRNRPTRKDEIHT*MSYFHETIWKDVPKFLCRIGTxAMKSIGICGRVPYNAPLIHF
B8LNW6__________________LREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRIDTxALKSIGINERVPYNAPLIQF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain