SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11889

Length: 234 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene11889
ATCTGAATGTCATATTTGAAGCGAAAAGGATCATTGAAACCACTGAAGGCAGTGAGATTTGCCCTTGATATTGCAAGGGGAATGAATTATTTACATGAGAATAAACCAGCACCTATTATCCATCGTGATCTCAAGCCTCCAAATATACTTCGGGATGATTCAGGGCATCTGAAAGTTGCAGATTTTGGAATAAGCAAACTGCTTAAGGTGCCATCTGAAACTGTTCGAGAAGAT

Ace file of the UniGene biog3_v1.0_unigene11889 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5121	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	integrin-linked protein kinase family protein	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.7.112.1	-	0.0	75%
Blast2go	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	75%
Blast2go	protein binding	GO:0005515	Molecular Function	75%
Blast2go	protein serine/threonine/tyrosine kinase activity	GO:0004712	Molecular Function	75%
Blast2go	ATP binding	GO:0005524	Molecular Function	75%
Blast2go	MAP kinase kinase kinase activity	GO:0004709	Molecular Function	75%
Blast2go	cytoplasm	GO:0005737	Cellular Component	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	75%
Blast2go	nucleus	GO:0005634	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Histone H4	IPR001951	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Integrin-linked protein kinase	IPR016253	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMC7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 147 aas, your sequence is shorter than subject: 78 - 502

Fln protein: I*MSYLKRKGSLKPLKAVRFALDIARGMNYLHENKPAPIIHRDLKPPNILRDDSGHLKVADFGISKLLKVPSETVRED

Protein Length: 79

Fln nts: ATCTGAATGTCATATTTGAAGCGAAAAGGATCATTGAAACCACTGAAGGCAGTGAGATTTGCCCTTGATATTGCAAGGGGAATGAATTATTTACATGAGAATAAACCAGCACCTATTATCCATCGTGATCTCAAGCCTCCAAATATACTTCGGGATGATTCAGGGCATCTGAAAGTTGCAGATTTTGGAATAAGCAAACTGCTTAAGGTGCCATCTGAAACTGTTCGAGAAGAT

Fln Alignment:

Contig11889___SYLKRKGSLKPLKAVRFALDIARGMNYLHENKPAPIIHRDLKPPNILRDDSGHLKVADFGISKLLKVPSETVRE
B8LMC7__________________SYLQKKGRLQPAKAVRVALEIARGMNYLHESKPEAIIHCNLKPRNILRDSGGHWKVTDFGLSQLLKLSSDKVRE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
229			33	66	0.997452
230	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain