SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11874

Length: 476 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene11874
AGTCCGTCGCGGTTACTTCTAATTCGAACCTTTCTGTAGCCAGGAAGAGGGCCAAGCGGGCGGCTGTACTCGTCTGCCTCTTTGAAGGCTCAGAGGGCGATCTTAGAGTTATTCTCACCCAAAGATCCGGCAATTTATCGTCTCATTCAGGGGAAGTTGCGTTACCTGGAGGTAAAATGGAAGAAAGAGATAAAGATGATTCTGAAACTGCTTTGAGAGAAGCAAAGGAGGAGATTGGCTTGGATCCCTCTCATGTTAAAGTTGTGACTACTCTCGAACCGTTTTTGTCGAAGTACCTTCTGAGAGTAGTACCTGTAGTTGGATTATTACCCGATAGGAAGTCATTTAGGCCTGTGATAAATCCAGGAGAAGTGGATGCAATCTTTGATGCACCACTTGAAATGTTCTTGAAGGATGAGAACTACCGGTCTGAAGAGAAGCAATGGATGGGTTACAATTACACTGTACACTACATT

Ace file of the UniGene biog3_v1.0_unigene11874 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5440	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	nudix hydrolase 15 [Arabidopsis thaliana] ref\|NP_849725.2\| nudix hydrolase 15 [Arabidopsis thaliana] ref\|NP_001031104.1\| nudix hydrolase 15 [Arabidopsis thaliana] dbj\|BAF00412.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE31022.1\| nudix hydrolase 1	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	nudix hydrolase 15	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	CoA pyrophosphatase activity	GO:0010945	Molecular Function	0.0	74%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	NUDIX hydrolase domain	IPR000086	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NMI4

Fln msg: Distance to subject end: 54 aas, your sequence is shorter than subject: 158 - 286

Fln protein: SVAVTSNSNLSVARKRAKRAAVLVCLFEGSEGDLRVILTQRSGNLSSHSGEVALPGGKMEERDKDDSETALREAKEEIGLDPSHVKVVTTLEPFLSKYLLRVVPVVGLLPDRKSFRPVINPGEVDAIFDAPLEMFLKDENYRSEEKQWMGYNYTVHYI

Protein Length: 159

Fln nts: AGTCCGTCGCGGTTACTTCTAATTCGAACCTTTCTGTAGCCAGGAAGAGGGCCAAGCGGGCGGCTGTACTCGTCTGCCTCTTTGAAGGCTCAGAGGGCGATCTTAGAGTTATTCTCACCCAAAGATCCGGCAATTTATCGTCTCATTCAGGGGAAGTTGCGTTACCTGGAGGTAAAATGGAAGAAAGAGATAAAGATGATTCTGAAACTGCTTTGAGAGAAGCAAAGGAGGAGATTGGCTTGGATCCCTCTCATGTTAAAGTTGTGACTACTCTCGAACCGTTTTTGTCGAAGTACCTTCTGAGAGTAGTACCTGTAGTTGGATTATTACCCGATAGGAAGTCATTTAGGCCTGTGATAAATCCAGGAGAAGTGGATGCAATCTTTGATGCACCACTTGAAATGTTCTTGAAGGATGAGAACTACCGGTCTGAAGAGAAGCAATGGATGGGTTACAATTACACTGTACACTACATT

Fln Alignment:

Contig11874___SVAVTSNSNLSVXXXXXXXXAVLVCLFEGSEGDLRVILTQRSGNLSSHSGEVALPGGKMEERDKDDSETALREAKEEIGLDPSHVKVVTTLEPFLSKYXXXXXXXXXXXPDRKSFRPVINPGEVDAIFDAPLEMFLKDENYRSEEKQWMGYNYTVHY
A9NMI4__________________SVAVTSNSELSVARKRAKRAAVLVCLFEGSEGDLRVILTQRSGNLSSHSGEVALPGGKMEERDKDDAETALREAKEEIGLDPSHVKVVTTLEPFLSKYLLRVVPVVGLLPDRKSFKPVINPGEVDAIFDAPLEMFLKDENYRSEEKQWMGFNYTVHY

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
216	20	80			0.995493
218			20	80	0.995493
259	20			80	0.995493
263		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain