SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11861

Length: 1621 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11861

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4713	87/88

Source	Descriptions	Term	Type	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase 5 n=2 Tax=Oryza sativa RepID=RH5_ORYSJ	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	rna helicase	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	88%
Blast2go	ATP binding	GO:0005524	Molecular Function	88%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	88%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB12

Fln msg: your sequence is longer than subject: 352 - 236

Fln protein: MRKSLPYCLVLSPTRELAQQIADVLADAGDSCGVKCSVCLYGGTSKGQQISAMKSGVDIVVATPGRLKDLMDSGFCDLSEASFVVLDEADRMLDLGFEPEVRAILSQTSSSRQTVMFSATWPVAVHQLAKEFMDPNPIKVVVGSQDLAANHDVMQIVEVLDDRARDMRLVNLLEKYHQSRRNRVLVFVLYKKEAERVESMLQRRGWNVVAVHGDKSQHERTKSVTLFKDGKCPLLIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTLADKARSGELVNVLREAGQVVPDDLLKFGTHIKKKESKLYGAHFKEISANAPKSTKITFADSDDE*

Protein Length: 353

Fln nts: AATGTGATA_-_ATGAGAAAATCTTTGCCATATTGTCTTGTTCTTTCACCTACAAGAGAGCTTGCTCAACAAATTGCGGATGTTTTGGCTGATGCTGGAGATTCCTGCGGAGTGAAATGTTCTGTTTGCCTGTATGGTGGTACCTCTAAGGGACAACAGATTTCTGCTATGAAGTCTGGAGTGGACATTGTTGTTGCTACTCCAGGGCGTTTGAAGGACTTAATGGACAGCGGCTTCTGTGACCTTAGTGAGGCTTCCTTTGTGGTATTAGATGAAGCAGATCGAATGCTTGACTTGGGATTTGAACCAGAAGTTCGTGCAATATTGAGCCAGACTTCATCTTCTCGGCAAACAGTTATGTTTAGTGCAACTTGGCCAGTAGCTGTACATCAATTGGCCAAAGAGTTTATGGACCCAAATCCTATAAAGGTGGTTGTTGGGTCACAGGATTTGGCTGCAAATCATGATGTCATGCAAATAGTGGAGGTTTTGGATGATCGGGCAAGAGACATGCGATTGGTAAACTTGCTTGAGAAATACCATCAGTCTCGAAGGAACCGTGTACTTGTCTTTGTCTTATATAAGAAAGAAGCAGAGAGAGTGGAGTCAATGCTTCAAAGAAGAGGATGGAATGTTGTTGCGGTTCATGGTGACAAATCTCAACATGAGCGTACAAAATCGGTCACCTTATTCAAGGATGGGAAGTGTCCCCTACTGATTGCCACAGACGTTGCTGCAAGAGGTCTTGATATTCCAGATGTGGAAGTTGTGATTAACTACAGTTTCCCTCTTACAACAGAGGACTATGTGCATCGTATAGGCAGGACTGGACGAGCTGGGAAAAAGGGTGTTGCACATACTTTCTTTACTCTAGCAGACAAGGCTCGTTCTGGAGAGCTTGTAAATGTTCTTAGAGAAGCTGGACAGGTGGTACCAGATGATCTCCTAAAATTTGGAACGCATATAAAGAAGAAGGAATCTAAATTATATGGGGCGCACTTCAAAGAAATTTCTGCCAATGCTCCAAAGTCGACAAAGATTACATTTGCAGACTCTGATGATGAATAA___AAGGCGACTGTCTCTTGGGTTTACTTTTTCTTAAAGTTATAACATGGAAATTCTGATGGTCAAAGGCTTTGGAAAGTCACCTTAGAAATTTCAGGTCTAGTATAAGAAGATTTTGCTTCCCTTTGGAGATGTCAATCTGACAATCAGAAGGAACAGGAGTATTTTGGCTTTACAGAAGGCTGCCTTGCATTAAAGCAAGAAAGTATTGAATATCATCGTATGAGGCCAGGTTAATAGTTGCTACATCACTATAATGCAACTGCAGTATCATAATTTTTTTGGTCTCCACCAATTCTTTTGAGCGATGTCTCTCTGGGATGATACATCCCCACATTGATTAAGTTGATTCATCCCTTGTTGAAATTCTAGATTGTGCTTGAAGGTTATTGAAGTACATGCACCAGAAGTTGGAGTCAGCTTATTTGGTGTTTTTGATCCCCATGAAAAACATCTGTGTCTCCTTTATGGTTATAGATATTTGTATGCATGACATTTGATGTATAGCAACTATATGAATTCATAGTGCTCAATGTATTTCCTTTACCTTGATCTATAA

Fln Alignment:

Contig11861___MFSATWPVAVHQLAKEFMDPNPIKVVVGSQDLAANHDVMQIVEVLDDRARDMRLVNLLEKYHQSRRNRVLVFVLYKKEAERVESMLQRRGWNVVAVHGDKSQHERTKSVTLFKDGKCPLLIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTLADKARSGELVNVLREAGQVVPDDLLKFGTHIKKKESKLYGAHFKEISANAPKSTKITFADSDDE
D5AB12__________________MFSATWPVAVHQLAKEFMDPNPIKVVVGSQDLAANHDVMQIVEVLEDRTRDMRLVSLLDKYHQSRRNRVLVFVLYKKEAVRVESMLQRRGWNVVAVHGDKSQHDRTKAVTLFKDGKCPLLIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQADKARSGELVNVLREAGQVVPDDLLKFGTHVKKKESKLYGAHFKEITANAPKSTKITFADSDDE

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1386		16	83		0.994512
1389	83			16	0.994512
1476	20		80		0.995493
1477		20	80		0.995493
1479			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain