SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11858

Length: 487 nt

UniGene Fasta

>biog3_v1.0_unigene11858
AATGTAAGCATGTTAGAAAGGAGCTTAAAAAGTTTCGATCTGCATATGAAGCCCATGTTCCCATGAAATACAAGCATTATTACAGGAAGATGAGGAAGGCTGGAGAATGGGGAGATCATGTTACTCTCCAGGCTGCTGCTGATCGGTTCAGCGCTAAAATATGTTTGCTTACATCATTCAGGGACACTTGCTTTATTGAGATCATGCCAAGACAGCAGAGTCCACAGAGAGAACTTTGGCTGAGCTTCTGGTCCGAAGTACACTACAATTCGCTGTATGAACTTGGAGAAGTTCCATACAGAGCAAAGCAGAAGAAGAAACACTGGCTGTTTTAGAGAAAACCTAGAGGTTCTCTTCTCAAGTTATAATGGATGAGACCCAACATACACTGGGAAAGCATTCTTCTAAATATAGAGATCACAGGTATCGACAATTACATGGTTGACTTGTACTAACCAGATTTGTGAAATGGCGCTGCCATTACATT

Ace file of the UniGene biog3_v1.0_unigene11858

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2484	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	cysteine proteinase-like protein [Arabidopsis thaliana] gb\|AAF14829.1\|AC011664_11 unknown protein [Arabidopsis thaliana] gb\|AAS76700.1\| At3g02070 [Arabidopsis thaliana] gb\|AAS92324.1\| At3g02070 [Arabidopsis thaliana] dbj\|BAH20151.1\| AT3G02070 [Arabidopsis	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	otu domain-containing protein ddb_g0284757-like	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	cysteine-type peptidase activity	GO:0008234	Molecular Function	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3		IPR000097	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Ovarian tumour, otubain	IPR003323	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8J8

Fln msg: your sequence is shorter than subject: 111 - 225

Fln protein: CKHVRKELKKFRSAYEAHVPMKYKHYYRKMRKAGEWGDHVTLQAAADRFSAKICLLTSFRDTCFIEIMPRQQSPQRELWLSFWSEVHYNSLYELGEVPYRAKQKKKHWLF*

Protein Length: 112

Fln nts: AATGTAAGCATGTTAGAAAGGAGCTTAAAAAGTTTCGATCTGCATATGAAGCCCATGTTCCCATGAAATACAAGCATTATTACAGGAAGATGAGGAAGGCTGGAGAATGGGGAGATCATGTTACTCTCCAGGCTGCTGCTGATCGGTTCAGCGCTAAAATATGTTTGCTTACATCATTCAGGGACACTTGCTTTATTGAGATCATGCCAAGACAGCAGAGTCCACAGAGAGAACTTTGGCTGAGCTTCTGGTCCGAAGTACACTACAATTCGCTGTATGAACTTGGAGAAGTTCCATACAGAGCAAAGCAGAAGAAGAAACACTGGCTGTTTTAG___AGAAAACCTAGAGGTTCTCTTCTCAAGTTATAATGGATGAGACCCAACATACACTGGGAAAGCATTCTTCTAAATATAGAGATCACAGGTATCGACAATTACATGGTTGACTTGTACTAACCAGATTTGTGAAATGGCGCTGCCATTACATT

Fln Alignment:

Contig11858___KHVRKELKKFRSAYEAHVPXXXXXXXXXXXXAGEWGDHVTLQAAADRFSAKICLLTSFRDTCFIEIMPRQQSPQRELWLSFWSEVHYNSLYELGEVPYRAKQKKKHWLF
D5A8J8__________________KEVVKQLKSFQSAYEGYVPMRYKDYLKKMKKSGEWGDHVTLQSAADRFGAKICLVTSFRDTCFIEIVPKQLNQRKELWLSFWSEVHYNSLYEIGEVPIRV-QKKKHWLF

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
110	20		80		0.995493
111		20	80		0.995493
112	20		80		0.995493
113	80			20	0.995493
114			80	20	0.995493
145	16		83		0.994512
146	16		83		0.994512
148			16	83	0.994512
149		83		16	0.994512
151			83	16	0.994512
152		83		16	0.994512
154		83	16		0.994512
155			16	83	0.994512
156	83		16		0.994512
281	40			60	1.0
282		40	60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain