SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11837

Length: 294 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene11837
ATATAAAGAAGAACTTAATGAATTCTCTACATATGATGGAGAGGAACATCCTGCCCACAAGCTTTTGCTTGATCCTGATAATTACCAATCAATTGAAAGTGATTTGATCTTTGCTGGTTTTGTAGGAATAAGGGACCCTCCACGTGCAGAGGTCCATAGAGCAATTAGTGATTGCAGAGAAGCTGGAATTCGTGTGTTTGTTATTACAGGCGATGACAAGAATACAGCAGAAGCCATATGTCATGAGATTGGGGTTTTTGAGACAGAAGTTAATCTTCAGGACAGAAGTACATT

Ace file of the UniGene biog3_v1.0_unigene11837 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11121	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative calcium ATPase [Oryza sativa Japonica Group] gb\|ABF95313.1\| Calcium-transporting ATPase 4, endoplasmic reticulum-type, putative, expressed [Oryza sativa Japonica Group] gb\|EAZ26484.1\| hypothetical protein OsJ_10376 [Oryza sativa Japonica Group]	-	-	0.0	74%
FL-Next	sp=Calcium-transporting ATPase 1, endoplasmic reticulum-type; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	ATPase, P-type, calcium-transporting	IPR005782	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	ATPase, P-type cation exchange, alpha subunit	IPR006069	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P92939

Fln msg: Distance to subject end: 379 aas, your sequence is shorter than subject: 97 - 1061

Fln protein: YKEELNEFSTYDGEEHPAHKLLLDPDNYQSIESDLIFAGFVGIRDPPRAEVHRAISDCREAGIRVFVITGDDKNTAEAICHEIGVFETEVNLQDRST

Protein Length: 98

Fln nts: ATATAAAGAAGAACTTAATGAATTCTCTACATATGATGGAGAGGAACATCCTGCCCACAAGCTTTTGCTTGATCCTGATAATTACCAATCAATTGAAAGTGATTTGATCTTTGCTGGTTTTGTAGGAATAAGGGACCCTCCACGTGCAGAGGTCCATAGAGCAATTAGTGATTGCAGAGAAGCTGGAATTCGTGTGTTTGTTATTACAGGCGATGACAAGAATACAGCAGAAGCCATATGTCATGAGATTGGGGTTTTTGAGACAGAAGTTAATCTTCAGGACAGAAGTACATT

Fln Alignment:

Contig11837___YKEELNEFSTYDG-EEHPAHKLLLDPDNYQSIESDLIFAGFVGIRDPPRAEVHRAISDCREAGIRVFVITGDDKNTAEAICHEIGVFETEVNLQDRS
P92939__________________YSDVPSDFATYDGSEDHPAHQQLLNPSNYSSIESNLIFVGFVGLRDPPRKEVRQAIADCRTAGIRVMVITGDNKSTAEAICREIGVFEADEDISSRS

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
48	33		33		0.997753
169	16			83	0.994512
172		83	16		0.994512
288	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain