SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11819

Length: 340 nt

UniGene Fasta

>biog3_v1.0_unigene11819
AATGTGTTAACACAGTTATCAGAGAACTTGTAATTGGTCTCTGGGTTCAGTGTGGAGTAAGGGATATCAGAGGGATTAGAGCGGGCTATCGTGGGTTTTATTCATCAGATCCTGTGGCTTTGAATCCGAAGTTGGTGGATAACTGGCACAAGACTGGGGGGACAATGCTGGAGACCTCGAGGGGAGGGTTTGATTTACAGAAGATAGTGGATGGCATTGAAGCCAATGGTTTTAACCAGGTCTATATCATTGGTGGGGATGGGACCATGAAGGGTGCAGTGAAGGTATTTGAAGAAGTTAAGAGGAGGAGACTAAGAGTTTCCATTGTTGGGATCCCAAA

Ace file of the UniGene biog3_v1.0_unigene11819

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2094	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	6-phosphofructokinase 2 [Arabidopsis thaliana] sp\|Q9FIK0.1\|K6PF2_ARATH RecName: Full=6-phosphofructokinase 2; AltName: Full=Phosphofructokinase 2; AltName: Full=Phosphohexokinase 2 dbj\|BAB11328.1\| pyrophosphate-fructose-6-phosphate 1-phosphotransferase-li	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	6-phosphofructokinase 2-like	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	6-phosphofructokinase.	EC:2.7.1.11	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	77%
Blast2go	Pentose phosphate pathway	00030	77%
Blast2go	Fructose and mannose metabolism	00051	77%
Blast2go	Galactose metabolism	00052	77%
Blast2go	Methane metabolism	00680	77%
Blast2go	Biosynthesis of phenylpropanoids	01061	77%
Blast2go	Biosynthesis of terpenoids and steroids	01062	77%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	77%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	77%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	77%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	77%
Blast2go	Biosynthesis of plant hormones	01070	77%
Blast2go	Metabolic pathways	01100	77%
Blast2go	Biosynthesis of secondary metabolites	01110	77%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	77%
Blast2go	glycolysis	GO:0006096	Biological Process	77%
Blast2go	protein binding	GO:0005515	Molecular Function	77%
Blast2go	6-phosphofructokinase activity	GO:0003872	Molecular Function	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	77%
Blast2go	6-phosphofructokinase complex	GO:0005945	Cellular Component	77%
Blast2go	plastid	GO:0009536	Cellular Component	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PT73

Fln msg: Distance to subject end: 246 aas, your sequence is shorter than subject: 112 - 426

Fln protein: CVNTVIRELVIGLWVQCGVRDIRGIRAGYRGFYSSDPVALNPKLVDNWHKTGGTMLETSRGGFDLQKIVDGIEANGFNQVYIIGGDGTMKGAVKVFEEVKRRRLRVSIVGIP

Protein Length: 113

Fln nts: AATGTGTTAACACAGTTATCAGAGAACTTGTAATTGGTCTCTGGGTTCAGTGTGGAGTAAGGGATATCAGAGGGATTAGAGCGGGCTATCGTGGGTTTTATTCATCAGATCCTGTGGCTTTGAATCCGAAGTTGGTGGATAACTGGCACAAGACTGGGGGGACAATGCTGGAGACCTCGAGGGGAGGGTTTGATTTACAGAAGATAGTGGATGGCATTGAAGCCAATGGTTTTAACCAGGTCTATATCATTGGTGGGGATGGGACCATGAAGGGTGCAGTGAAGGTATTTGAAGAAGTTAAGAGGAGGAGACTAAGAGTTTCCATTGTTGGGATCCCAAA

Fln Alignment:

Contig11819___VNTVIRELVIGLWVQCGVRDIRGIRAGYRGFYSSDPVALNPKLVDNWHKTGGTMLETSRGGFDLQKIVDGIEANGFNQVYIIGGDGTMKGAVKVFEEVKRRRLRVSIVGIP
C0PT73__________________VNTVVRELVIGLWSQCGVRDIRGIRSGYRGFYSSDPVALTPKLVDNWHRTGGTVLETSRGGFDLQKIVDGIEANGFNQVYIIGGDGTMKGAVKVFEEVKRRRLKVSIVGIP

SNPs (tot: 4)

Position	A %	G %	T %	Probability
96	25	75		0.996473
97	25		75	0.996473
99		25	75	0.996473
198	83	16		0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain