SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11808

Length: 1146 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11808

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8843	23/26
SustainPine v2.0	sp_v2.0_unigene14541	3/26

Source	Descriptions	Term	Type	Identity
AutoFact	isoleucyl-tRNA synthetase [Arabidopsis thaliana] gb\|AEE82867.1\| isoleucyl-tRNA synthetase [Arabidopsis thaliana]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	68%
Blast2go	isoleucyl-trna cytoplasmic-like	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Isoleucine--tRNA ligase.	EC:6.1.1.5	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Valine, leucine and isoleucine biosynthesis	00290		0.0	82%
Blast2go	Aminoacyl-tRNA biosynthesis	00970		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	82%
Blast2go	isoleucyl-tRNA aminoacylation	GO:0006428	Biological Process	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	isoleucine-tRNA ligase activity	GO:0004822	Molecular Function	82%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	82%
Blast2go	cytosol	GO:0005829	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Aminoacyl-tRNA synthetase, class Ia	IPR002300	-	-
Sma3	Isoleucyl-tRNA synthetase	IPR002301	-	-
Sma3	Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding	IPR013155	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3		IPR015905	-	-
Sma3		IPR018353	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HYQ5

Fln msg: Distance to subject end: 19 aas, your sequence is shorter than subject: 382 - 1183

Fln protein: EDCRVALSTLYHVLLTTCKAMSPFTPFFVEVLYQNLRNVLDAGAEESIHYCSFPEVGGQREQRIEQSVTRMMTVIDLARNIRERNNKPLKTPLREMVVVHPDADFLEDITGKLLEYVREELNVRSLVPCNDPLKYASLRAEPDFSVLGKRLGKAMGIVAKEVKSMGQASILAFEKSGEVTLAGHTLKLSDIKVIREFKLPNGVEKEDVDAAGDGDVLVVLDLCPDDTLFEAGVAREIVNRVQKLRKKAGLEPMDSVEVYFEPCEGDRLVLEQVIESQGSYIRDAVGSPLLPSILCPPYAVILASENFSGVAGMSFTIRLSRPSLVFINNALSKLCSDNETNANGVKVYLLSRDHLNLKAELLSANGKVRVACIEGQPRLDNI

Protein Length: 383

Fln nts: GAGGATTGCAGAGTGGCACTTTCTACTCTTTACCATGTTCTTTTGACTACGTGTAAGGCAATGTCTCCATTCACTCCATTCTTTGTTGAAGTTTTATATCAAAATCTCCGTAATGTTCTTGATGCTGGAGCAGAGGAAAGTATCCATTACTGTAGTTTTCCAGAAGTTGGAGGACAGAGGGAGCAGCGCATTGAGCAAAGTGTTACAAGGATGATGACTGTTATAGATTTGGCCCGAAATATTCGTGAGCGGAATAATAAACCTCTAAAGACACCTCTCAGGGAGATGGTTGTAGTTCATCCAGACGCTGACTTCCTTGAGGATATAACTGGAAAATTACTGGAGTATGTGAGGGAGGAATTAAATGTCAGATCATTGGTTCCCTGTAACGACCCTTTGAAATACGCATCCTTGCGAGCTGAACCAGATTTTAGTGTGTTAGGTAAGAGATTAGGCAAGGCAATGGGCATTGTTGCCAAGGAAGTGAAGTCTATGGGACAGGCTAGCATTCTAGCCTTTGAGAAGTCTGGAGAAGTAACACTTGCAGGACATACTTTGAAACTCAGTGACATAAAGGTCATTCGTGAGTTTAAGTTGCCTAATGGTGTAGAGAAAGAGGATGTGGATGCAGCTGGTGATGGTGATGTTCTGGTAGTATTGGACTTGTGTCCTGATGACACTTTGTTTGAAGCGGGAGTAGCTCGTGAGATTGTCAATCGAGTTCAGAAGCTCCGTAAGAAAGCTGGATTAGAACCAATGGACAGTGTTGAAGTCTACTTTGAGCCATGTGAAGGAGACAGACTTGTGTTGGAACAGGTTATTGAGTCACAGGGTTCCTATATACGGGATGCAGTTGGCTCACCATTGCTTCCTTCTATTCTCTGTCCACCTTATGCTGTAATCCTTGCATCTGAAAATTTTAGTGGTGTTGCTGGGATGTCATTCACAATAAGGCTATCAAGACCATCTTTGGTATTCATCAATAATGCACTTAGTAAGTTGTGTTCAGACAATGAGACAAATGCAAATGGTGTAAAAGTGTATCTGCTTTCTAGGGATCATTTGAACCTAAAGGCAGAGCTTCTGTCTGCCAATGGCAAGGTCCGTGTAGCATGCATAGAAGGGCAGCCACGTCTTGATAACATT

Fln Alignment:

Contig11808___DCRVALSTLYHVLLTTCKAMSPFTPFFVEVLYQNLRNVLDAGAEESIHYCSFPEVGGQREQRIEQSVTRMMTVIDLARNIRERNNKPLKTPLREMVVVHPDADFLEDITGKLLEYVREELNVRSLVPCNDPLKYASLRAEPDFSVLGKRLGKAMGIVAKEVKSMGQASILAFEKSGEVTLAGHTLKLSDIKVIREFKLPNGVEKEXXXXXXXXXXXXXXXXCPDDTLFEAGVAREIVNRVQKLRKKAGLEPMDSVEVYFEPCEGDRLVLEQVIESQGSYIRDAVGSPLLPSILCPPYAVILASENFSGVAGMSFTIRLSRPSLVFINNALSKLCSDNETNANGVKVYLLSRDHLNLKAELLSANGKVRVACIEGQPRLD
F6HYQ5__________________DCRTALSTLYYVLLTSCKVMAPFTPFFTEVLYQNLRKVSN-GSEESIHYCSFPQEEGQRGERIEQSVARMTTIIDLARNIRERHNKPVKTPLREMVVVHPDQEFLDDIAGKLKEYVLEELNIRSLVPCNDPLKYASLRAEPDFSVLGKRLGKSMGVVAKEVKAMSQEDILAFEKAGEVTISNHCLKLTDIKVFRDFKRPENMTAEEIDASGDGDVVVILDLRPDESLFEAGIAREVVNRIQKLRKKAALEPTDMVEVYFESLDEDLSAMQQVLDSQEVYIRDALGSPLLPSSMIQPHTVILCEESFHGVSKFDFVIRLARPTLVFNTNAVLALYSGNTKFAQGLQAYLFSRDHYNLKSEFQLGNSKIKVDCIENQPAVD

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
513	33			66	0.997452
516		66		33	0.997452
666	14			85	0.993533
667	14		85		0.993533
668		42		57	1.0
669	28		71		1.0
679		57	42		1.0
732	20			80	0.995493
734	20	80			0.995493
735			80	20	0.995493
805		20		80	0.995493
833			75	25	0.996473
834			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain