SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11799

Length: 1656 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11799

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene230	44/44

Source	Descriptions	Term	Type	Identity
AutoFact	Cyclin-dependent kinase C-1 n=5 Tax=Oryza sativa RepID=CDKC1_ORYSJ	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	cyclin-dependent kinase c-2-like	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	[RNA-polymerase]-subunit kinase.	EC:2.7.11.23	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	87%
Blast2go	leaf development	GO:0048366	Biological Process	87%
Blast2go	response to virus	GO:0009615	Biological Process	87%
Blast2go	RNA polymerase II carboxy-terminal domain kinase activity	GO:0008353	Molecular Function	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	ATP binding	GO:0005524	Molecular Function	87%
Blast2go	cytosol	GO:0005829	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXN0

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 65 aas, putative chimeric sequence, your sequence is shorter than subject: 489 - 575

Fln protein: MYCFEKLEQIGEGTYGQVYMAKEIETGEIVALKKIRMDNEREGFPITAIREIKLLKKLQHENVIKLKEIVTSPGPEKDEQGKSDGNKYNGSIYMVFEYMDHDLTGLAERPGMRFSVPQIKCYMKQLLIGLHYCHINQVLHRDIKGSNLLIDNNGILKLADFGLARSFCSDQNGNLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLYGKPILPGKNEPEQLTKIFELCGSPDESNWPGVSKLPWYSNFKPQRQMKRRVRESFKNFDRHALDLVEKMLTLDPSQRISAKDALDAEYFWTDPVPCAPSSLPRYEPSHDFQTKRKRQQQRQHDEMTKRQKISQHPPQQHVRLPPIQNAGQGHLPLRPGPNPTMHNPPPQFPVGPSHYTGGPRGAGGQNRHPQNIRPLHAAQGGGYNANRGYGGPPQQQGGGYPPHGMGNQGPRGGQFGGRGAGYSQGGPYGGPVGGRGPNVGGGNRGPQFWSEQ*

Protein Length: 490

Fln nts: AATGTATTGCTTTGAAAAGCTTGAACAGATTGGAGAAGGCACATATGGGCAAGTTTACATGGCCAAGGAGATCGAGACTGGGGAAATTGTTGCCCTGAAGAAAATTCGTATGGACAATGAAAGAGAAGGGTTCCCAATAACCGCCATTCGGGAAATCAAGCTTCTGAAGAAGTTGCAGCATGAAAATGTTATCAAGTTAAAGGAAATTGTGACCTCTCCAGGTCCTGAGAAGGATGAACAAGGGAAATCAGATGGTAATAAGTACAATGGAAGCATTTACATGGTATTTGAATATATGGATCATGATCTGACTGGTTTAGCTGAGAGACCAGGAATGCGCTTTAGTGTTCCCCAGATTAAGTGTTACATGAAGCAATTGTTAATCGGGCTGCACTATTGTCATATCAACCAAGTTTTGCATCGGGACATCAAAGGATCTAATCTGCTGATTGATAATAATGGGATCCTAAAGCTTGCCGATTTTGGCCTGGCAAGATCATTCTGCAGTGACCAGAATGGAAACCTGACCAATAGAGTAATAACATTGTGGTATAGGCCCCCAGAGTTGCTGCTGGGCTCAACAAAATATGGTCCAGCTGTTGACATGTGGTCAGTGGGATGTATATTTGCGGAGCTTTTATATGGAAAACCTATTTTACCAGGAAAGAATGAGCCAGAGCAACTCACTAAAATTTTTGAGCTTTGTGGATCACCGGATGAGTCCAACTGGCCGGGTGTTTCCAAGCTTCCATGGTACAGCAATTTCAAGCCACAAAGGCAAATGAAGAGGCGTGTTAGGGAATCTTTTAAAAATTTTGACAGACATGCTTTGGATCTTGTGGAAAAAATGCTCACTTTGGATCCTAGTCAGAGAATAAGTGCAAAGGATGCACTTGATGCTGAATATTTCTGGACAGATCCGGTTCCTTGTGCACCAAGCAGCTTGCCAAGGTATGAACCATCACATGATTTTCAAACAAAGAGGAAACGGCAGCAACAAAGGCAACATGATGAAATGACCAAGAGACAGAAAATTTCACAGCATCCTCCACAACAGCATGTTAGACTACCTCCTATACAAAATGCTGGACAAGGTCATCTTCCTCTAAGGCCAGGTCCAAATCCAACTATGCATAATCCACCTCCCCAGTTTCCAGTTGGACCTAGTCATTATACGGGAGGACCTAGGGGAGCTGGTGGACAGAATAGGCATCCTCAGAATATACGCCCACTCCATGCAGCTCAAGGGGGAGGATATAATGCAAATCGAGGATATGGGGGCCCTCCTCAACAGCAAGGAGGAGGATATCCCCCACATGGGATGGGAAATCAAGGACCAAGAGGTGGACAATTTGGGGGTAGAGGTGCAGGCTATTCTCAAGGAGGTCCTTATGGTGGACCTGTTGGGGGCCGAGGTCCAAATGTTGGTGGAGGCAATCGAGGTCCACAGTTTTGGTCGGAACAGTGA___ATCGGTTGTGGAGTACACATTTAGCTTGCATGTGATACTATTAAATGCAAATGTCTTTAGTTTGAAATTGTTAAATCATCCGAGCATGGCCGGATACACCTTTATAAATTCAGGAATTAATCACTTGCTCAGTACGTTTTGCTCAACACTACAGCAAAGCTACATTTTTTTCTTACATCTAAGATTTT

Fln Alignment:

Contig11799___CFEKLEQIGEGTYGQVYMAKEIETGEIVALKKIRMDNEREGFPITAIREIKLLKKLQHENVIKLKEIVTSPGPEKDEQGKSDGNKYNGSIYMVFEYMDHDLTGLAERPGMRFSVPQIKCYMKQLLIGLHYCHINQVLHRDIKGSNLLIDNNGILKLADFGLARSFCSDQNGNLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLYGKPILPGKNEPEQLTKIFELCGSPDESNWPGVSKLPWYSNFKPQRQMKRRVRESFKNFDRHALDLVEKMLTLDPSQRISAKDALDAEYFWTDPVPCAPSSLPRYEPSHDFXXXXXXXXXXXHDEMTKRQKIS-QHPPQQHVRLPPIQNAGQGHLPLRXXXXXXXXXXXXXXXVGPSHYTGGPRGAGGQNRHPQNIRPLH
A9NXN0__________________CFEKLEQIGEGTYGQVYMAKEIETGEIVALKKIRMDNEREGFPITAIREIKLLKKLQHENVIKLKEIVTSPGPEKDEQGKSDGNKYNGSIYMVFEYMDHDLTGLAERPGMRFSVPQIKCYMKQLLIGLHYCHINQVLHRDIKGSNLLIDNNGILKLADFGLARSFCSDQNGNLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLYGKPILPGKNEPEQLTKIFELCGSPDESNWPGVSKLPWYSNFKPQRLMKRRVRESFKNFDRHALDLVEKMLTLDPSQRICAKDALDAEYFWTDPVPCAPSSLPRYEPSHDFQTKRKRQQQRQHDEMTKRQKISQQHPQQQHVRLPPIQTAGQAHLPLRPGPNPPMHNPPPQFPVGPSHYGGGPRGAGGQNRHPQNIRPLH

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
197	25		75		0.996473
198	25			75	0.996473
200	75		25		0.996473
201	75			25	0.996473
315	25		75		0.996473
316		25	75		0.996473
317	25			75	0.996473
545	80		20		0.995493
546	80			20	0.995493
578	25		75		0.996473
580	20		80		0.995493
581	20	80			0.995493
584		80		20	0.995493
594	16			83	0.994512
595			83	16	0.994512
892	16		83		0.994512
896		83		16	0.994512
901	14		85		0.993533
927	42		57		1.0
957	16		83		0.994512
987			83	16	0.994512
988	83			16	0.994512
1041			11	88	0.923564
1152		83		16	0.994512
1172	16		83		0.994512
1174		80		20	0.995493
1270	83	16			0.994512
1273		83		16	0.994512
1340		14	85		0.993533
1342		85		14	0.993533
1343		85		14	0.993533
1511	14	85			0.993533
1512		14		85	0.993533
1520			83	16	0.994512
1539	83	16			0.994512
1550		87		12	0.992554
1561			71	28	1.0
1640	33			66	0.997452
1641		33		66	0.997452
1642	33			66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain