SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11776

Length: 274 nt

UniGene Fasta

>biog3_v1.0_unigene11776
CGGTTTTGAAACATGTCATAGAAAACTCCAAAAATGTGGAGAAAATTTGCATTTAATCCTGATTCAGAATTATCTTACGACATGGGAATATCAGTGCAGTTAGAAGCTACTGGTGTTGGAGCTCAGAATGATCAAGCACAGCTTGCCCTCAGAAGAGCTGGAGAAATTGAAAACAAGTATAACATGATTGTTGCTAAGTTAGCTGTTGAATTAAGCCTAAAGCAAAGTACTATGGCAGAGCTTGAGTGGTATAAAGAGCTTTGTGAGAAACATT

Ace file of the UniGene biog3_v1.0_unigene11776

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6112	6/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	unknown [Picea sitchensis]	-	-	5.38613e-32	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Triacylglycerol lipase.	EC:3.1.1.3	-	5.38613e-32	77%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerolipid metabolism	00561		5.38613e-32	77%
Blast2go	Metabolic pathways	01100		5.38613e-32	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	5.38613e-32	77%
Blast2go	triglyceride lipase activity	GO:0004806	Molecular Function	5.38613e-32	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW04

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 208 aas, your sequence is shorter than subject: 91 - 616

Fln protein: RF*NMS*KTPKMWRKFAFNPDSELSYDMGISVQLEATGVGAQNDQAQLALRRAGEIENKYNMIVAKLAVELSLKQSTMAELEWYKELCEKH

Protein Length: 92

Fln nts: CGGTTTTGAAACATGTCATAGAAAACTCCAAAAATGTGGAGAAAATTTGCATTTAATCCTGATTCAGAATTATCTTACGACATGGGAATATCAGTGCAGTTAGAAGCTACTGGTGTTGGAGCTCAGAATGATCAAGCACAGCTTGCCCTCAGAAGAGCTGGAGAAATTGAAAACAAGTATAACATGATTGTTGCTAAGTTAGCTGTTGAATTAAGCCTAAAGCAAAGTACTATGGCAGAGCTTGAGTGGTATAAAGAGCTTTGTGAGAAACATT

Fln Alignment:

Contig11776___RKFAFNPDSELSYDMGISVQLEATGVGAQNDQAQLALRRAGEIENKYNMIVAKLAVELSLKQSTMAELEWYKELCEK
A9NW04__________________KRFA-NPDSKSSYEMGISLQLEAIGVGAQNDHAQFALRRAGETEDNYNTNVDKLAIELSLKQSSMAELEWYKERCEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain