SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11753

Length: 303 nt

UniGene Fasta

>biog3_v1.0_unigene11753
GGGCGGAGTATCTTGCCCTTAAATGTTGCAATAAACAAAATTTGAATCACGGAGTATTGCTGGTGGGATATGGTGCAGCGGGGTATGCCCCTGGCAGGTTCAAGGAGAAGCCATTCTGGATCATCAAGAATTCATGGGGCCCTGATTGGGGTGAAGATGGCTACTACAAATTGTGCAGAGGACACAATATTTGTGGAATAAACACCATGGTTTCCACTGTTGCAGCAGCCATTATTCCAACTGATGATGACCACTGACCATCTCTTTCTGGTTGAAATGTGTACATAATTGTTTTGGGTTAAT

Ace file of the UniGene biog3_v1.0_unigene11753

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12636	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Cysteine protease, putative n=1 Tax=Ricinus communis RepID=B9RHA4_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	cysteine protease	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Cysteine endopeptidases.	EC:3.4.22.-	-	0.0	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	0.0	79%
Blast2go	cysteine-type endopeptidase activity	GO:0004197	Molecular Function	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase C1A, papain	IPR013128	-	-
Sma3	Peptidase C1A, papain C-terminal	IPR000668	-	-
Sma3	Proteinase inhibitor I29, cathepsin propeptide	IPR013201	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU42

Fln msg: your sequence is shorter than subject: 85 - 394

Fln protein: AEYLALKCCNKQNLNHGVLLVGYGAAGYAPGRFKEKPFWIIKNSWGPDWGEDGYYKLCRGHNICGINTMVSTVAAAIIPTDDDH*

Protein Length: 86

Fln nts: GGGCGGAGTATCTTGCCCTTAAATGTTGCAATAAACAAAATTTGAATCACGGAGTATTGCTGGTGGGATATGGTGCAGCGGGGTATGCCCCTGGCAGGTTCAAGGAGAAGCCATTCTGGATCATCAAGAATTCATGGGGCCCTGATTGGGGTGAAGATGGCTACTACAAATTGTGCAGAGGACACAATATTTGTGGAATAAACACCATGGTTTCCACTGTTGCAGCAGCCATTATTCCAACTGATGATGACCACTGA___CCATCTCTTTCTGGTTGAAATGTGTACATAATTGTTTTGGGTTAAT

Fln Alignment:

Contig11753___CNKQNLNHGVLLVGYGAAGYAPGRFKEKPFWIIKNSWGPDWGEDGYYKLCRGHNICGINTMVSTVAAAIIPTDD
A9NU42__________________CNKQNLDHGVLLVGYGAAGYAPGRLKNKPFWIIKNSWGPDWGEDGYYKLCRGHNVCGINTMVSTVAAANIQTDD

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
267	16			83	0.994512
270			83	16	0.994512
290	25			75	0.996473
291		25	75		0.996473
292	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain