SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11733

Length: 1807 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11733

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27692	7/8
SustainPine v2.0	sp_v2.0_unigene35563	1/8

Source	Descriptions	Term	Type	Identity
AutoFact	aldehyde dehydrogenase [Vitis pseudoreticulata]	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	aldehyde dehydrogenase family 2 member mitochondrial-like	-	-	87%

Source	InterPros	Term	Type	Identity
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUF6

Fln msg:

Fln protein: MAAMRAGRGFSSLLTRAVRSAGTRSPAVGLAALSQEASIKNTGIRRLGTAASALEEPIAPPVQVKYTQLLIDGKFVNAASGRTFPTLDPRTGDLIVDVAEGDAEDVDRAVKAARKAFDEGPWPKMTAYERSCIMLRFADLLEKHNDEIAALETWDNGKPYEQAALVEVPMAVRLFRYYAGWADKIHGLTVPADGPYHCQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNSIVLKSAEQTPLTALYAAKLFHEAGLPPGVLNVISGYGPTAGAAVARHMDIDKVAFTGSTSTGQAVLELASKSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHESIHDEFVEKAKARCLSRVVGDPFRKGVEQGPQIDQEQFNKVMGYIKSGRESGAKLVTGGDQIGTKGFYIMPTIFSEVKDDMTIATDEIFGPVQSIIKFKTLDEVIKRANATRYGLAAGVFTKNLETANSLTRALRVGTVWVNCFDIFDAGIPFGGYKMSGTGREKGIYSLNNYLQVKAVVSPLKNPAWL*

Protein Length: 549

Fln nts: AATGCGGGATCTATTTCCCACGAGGTAGAGGAAGAAAGTTGTTGGAGCTCTCAGGGTGAACGAAA_-_ATGGCAGCAATGCGAGCAGGCAGGGGATTTTCTTCACTTCTAACTCGAGCAGTCCGCTCGGCTGGTACACGGTCACCCGCCGTTGGATTGGCAGCTTTATCACAAGAAGCATCCATAAAGAATACTGGGATTCGACGTTTAGGAACAGCCGCAAGTGCTTTGGAAGAACCTATAGCACCACCTGTCCAAGTGAAGTATACACAGCTTCTTATCGATGGAAAATTTGTTAATGCGGCTTCTGGAAGAACATTTCCAACATTGGATCCCAGAACAGGGGATTTGATTGTCGATGTGGCTGAAGGTGATGCAGAAGACGTGGACAGGGCTGTAAAGGCTGCACGAAAAGCCTTTGACGAGGGCCCATGGCCGAAAATGACTGCTTATGAGAGATCATGTATTATGCTCCGGTTCGCTGACTTGCTTGAAAAGCATAACGACGAGATTGCAGCCTTGGAGACATGGGACAATGGGAAGCCTTATGAGCAAGCAGCCTTGGTTGAAGTGCCAATGGCAGTGCGGCTATTTCGTTACTATGCAGGGTGGGCAGATAAAATACATGGCCTTACAGTTCCAGCTGATGGACCTTATCATTGTCAAACATTACATGAGCCTATTGGAGTTGCAGGTCAAATCATCCCTTGGAATTTTCCACTACTTATGTTTGCTTGGAAAGTTGGTCCTGCCCTAGCTTGTGGGAACAGTATTGTATTAAAGAGTGCTGAGCAGACACCTTTAACAGCTCTTTATGCAGCAAAACTTTTCCACGAGGCTGGACTGCCTCCAGGAGTTCTGAATGTCATTTCAGGATATGGTCCAACTGCGGGAGCTGCAGTTGCAAGACACATGGATATTGATAAGGTTGCTTTTACAGGTTCAACTTCTACTGGTCAAGCAGTGCTAGAGTTAGCTTCCAAGAGCAACCTTAAGCCAGTGACATTGGAACTTGGAGGAAAGTCCCCTTTTATTGTATGCGAAGATGCTGATGTTGATCAAGCCGTGGAGCTCGCTCACTTTGCATTATTTTTCAATCAGGGTCAATGCTGCTGTGCTGGGTCACGAACCTTTGTACATGAGAGTATCCATGATGAGTTTGTAGAAAAAGCAAAAGCACGGTGTTTAAGTCGGGTTGTCGGTGATCCTTTTAGAAAAGGTGTTGAGCAGGGTCCTCAGATTGACCAGGAACAGTTTAACAAGGTTATGGGTTATATAAAGTCTGGGAGGGAGAGTGGTGCAAAACTTGTAACAGGGGGAGACCAAATTGGTACCAAGGGCTTCTATATTATGCCTACCATCTTCTCAGAAGTCAAGGATGACATGACCATAGCTACTGACGAAATATTTGGTCCAGTACAGTCAATTATAAAATTCAAAACTTTAGACGAAGTAATAAAGCGGGCGAATGCTACTCGTTATGGCTTGGCAGCGGGAGTGTTTACAAAGAATCTAGAGACCGCAAACTCTCTTACTCGGGCATTACGTGTCGGAACAGTTTGGGTTAACTGCTTTGACATTTTTGATGCTGGTATACCTTTTGGTGGCTATAAAATGAGTGGCACTGGAAGAGAGAAGGGTATCTACAGTCTCAATAACTACTTACAGGTTAAAGCTGTTGTCTCACCTTTGAAGAATCCAGCCTGGTTGTAG___GCTGTTAGTTCCTACAAATGGTTCAATTGTGTGGGGAACATATTCAGTTCCTGATGGTCTTGTCAAGTCAGTCTAATTTGAATTTAGCTTTCTACATT

Fln Alignment:

Contig11733___MRAGRGFSSLLTRAVRSAGTRSPAVGLAALSQEASIKNTGIRRLGTAASALEEPIAPPVQVKYTQLLIDGKFVNAASGRTFPTLDPRTGDLIXXXXXXXXXXXXXXXKAARKAFDEGPWPKMTAYERSCIMLRFADLLEKHNDEIAALETWDNGKPYEQAALVEVPMAVRLFRYYAGWADKIHGLTVPADGPYHCQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNSIVLKSAEQTPLTALYAAKLFHEAGLPPGVLNVISGYGPTAGAAVARHMDIDKVAFTGSTSTGQAVLELASKSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHESIHDEFVEKAKARCLSRVVGDPFRKGVEQGPQIDQEQFNKVMGYIKSGRESGAKLVTGGDQIGTKGFYIMPTIFSEVKDDMTIATDEIFGPVQSIIKFKTLDEVIKRANATRYGLAAGVFTKNLETANSLTRALRVGTVWVNCFDIFDAGIPFGGYKMSGTGREKGIYSLNNYLQVKAVVSPLKNPAWL
A9NUF6__________________MAAGRGFSSLVARAVRSAGARPSAFGTSVSSHQASIRNDGIRRLGTAASALEEPIAPPVQVKHTQLLIDGQFVNAASGKTFPTFDPRTGDVIANVAEGDAPDVNRAVKAARKAFDVGPWPKMTAYERSCIMLRFADLLEKHNDEIAALETWDNGKPYEQASLVEVPMAVRLFRYYAGWADKIHGLTVPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNSIVLKSAEQTPLTALYAAKLFHEAGLPPGVLNIVSGFGPTAGAAIARHMDIDKVAFTGSTETGKAVLELASKSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHESIHDEFVEKAKARCLSRVVGDPFRKGVEQGPQIDQEQFNKILRYIKAGKESGAKLVTGGDQIGTKGFYIMPTIFSEVQDDMAIATDEIFGPVQSIIKFKTLDEVIKRANASRYGLAAGVFTQNIETANTLTRALRVGTVWVNCFDIFDAGIPFGGYKMSGTGREKGIYSLQNYLQVKAVVTPLKNPAWL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
8			80	20	0.995493
227	16		83		0.994512
228		16	83		0.994512
230	83			16	0.994512
231			83	16	0.994512
271	20			80	0.995493
272		20		80	0.995493
273	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain