SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11729

Length: 230 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene11729
ATCATGGCACCAGCGAGAGTGGAGAGCCTCGCTTTGAGCGGCCTGGCCGCTATTCCTCCTGAGTATGTGAGACCGGTAGAGGAGAGACCTACTGACTGCGTTCTCAACTTGAAAGGAGGAATGGAGGACGAAGGCCCGCAGATTCCAGTGGTAGATGTTGCCGGATGGGATTCTGGTGACGAGGAGATCAAGAAGGAGATTGGGCGTCAGGTGGCCAAGGCAAGCAGGGA

Ace file of the UniGene biog3_v1.0_unigene11729 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene60493	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	Anthocyanidin synthase n=1 Tax=Ginkgo biloba RepID=B2M0X8_GINBI	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	anthocyanidin synthase	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVW2

Fln msg: Distance to subject end: 284 aas, your sequence is shorter than subject: 75 - 359

Fln protein: MAPARVESLALSGLAAIPPEYVRPVEERPTDCVLNLKGGMEDEGPQIPVVDVAGWDSGDEEIKKEIGRQVAKASR

Protein Length: 76

Fln nts: ATC_-_ATGGCACCAGCGAGAGTGGAGAGCCTCGCTTTGAGCGGCCTGGCCGCTATTCCTCCTGAGTATGTGAGACCGGTAGAGGAGAGACCTACTGACTGCGTTCTCAACTTGAAAGGAGGAATGGAGGACGAAGGCCCGCAGATTCCAGTGGTAGATGTTGCCGGATGGGATTCTGGTGACGAGGAGATCAAGAAGGAGATTGGGCGTCAGGTGGCCAAGGCAAGCAGGGA

Fln Alignment:

Contig11729___MAPARVESLALSGLAAIXXXXXXXXXXXPTDCVLNLKGGMEDEGPQIPVVDVAGWDSGDEEIKKEIGRQVAKASR
A9NVW2__________________MAPARVESLALSGLAAIPPEYVRPVEERPTECVLKVKG-VEDEGPQIPVVDIAGWDSADEEIKKEIGRQVAKASR

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
111	11			88	0.923564
113	11	88			0.923564
115		88		11	0.923564
119	12			87	0.992554
122	87			12	0.992554
123			87	12	0.992554
131		85		14	0.993533
132			85	14	0.993533
156	16	83			0.994512
157			83	16	0.994512
158			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain