SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11714

Length: 910 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11714

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene434	30/30

Source	Descriptions	Term	Type	Identity
AutoFact	Xaa-Pro dipeptidase [Arabidopsis thaliana] dbj\|BAE99141.1\| putative prolidase [Arabidopsis thaliana] gb\|AEE85637.1\| Xaa-Pro dipeptidase [Arabidopsis thaliana]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	xaa-pro dipeptidase	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Dipeptidases.	EC:3.4.13.-	-	0.0	80%
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aminopeptidases.	EC:3.4.11.-	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	cellular process	GO:0009987	Biological Process	80%
Blast2go	dipeptidase activity	GO:0016805	Molecular Function	80%
Blast2go	manganese ion binding	GO:0030145	Molecular Function	80%
Blast2go	aminopeptidase activity	GO:0004177	Molecular Function	80%
Blast2go	chloroplast	GO:0009507	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase M24, structural domain	IPR000994	-	0.0	-
Sma3	Aminopeptidase P N-terminal domain	IPR007865	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUB9

Fln msg: Separated hits, possible frame ERROR between 765 and 767, Distance to subject end: 28 aas, your sequence is shorter than subject: 304 - 497

Fln protein: NVFKGIECFNTNLDILRPILTECRVFKSHLELNLLRYVNDVSSAAHVEVMRRTKVGMKEYQLESTFLHYVYMFGGCRRCSYTCICATGENSSVLHYGHAGAPNDRTLKDGDMALLDMGAEYYFYGSDITCSFPVNGKFTDDQRVVYNAVLDAHKAVISKMKPGVSWVEMHKLAESVIIKSLKDANILLGTVEEMLEKRLGAVFMPHGLGHFLGLDTHDPGGYVKGLERPKEPGLRSLRTVRVLQEGMFVTVEPGxxYFIDATLVPAMVNPDTSSFFNKQLILRFQKVGGVRIESDVIVTATGYI

Protein Length: 305

Fln nts: AATGTATTCAAGGGAATTGAATGTTTCAATACCAATCTTGATATTTTACGTCCTATTTTGACTGAATGCCGTGTATTCAAGTCACATTTGGAATTGAATCTCCTACGATATGTCAATGATGTGAGCTCAGCAGCTCATGTTGAGGTCATGCGAAGAACAAAAGTTGGGATGAAGGAGTATCAATTGGAAAGCACGTTCTTGCACTATGTGTATATGTTTGGTGGTTGTAGGCGTTGCTCCTATACTTGCATCTGTGCAACGGGGGAGAATAGTTCTGTTCTCCACTATGGACATGCTGGAGCTCCAAATGATAGGACACTAAAGGATGGTGACATGGCATTATTGGATATGGGTGCGGAGTACTATTTTTATGGTTCTGATATAACATGCTCATTCCCTGTTAACGGAAAATTCACCGATGACCAGCGAGTTGTGTATAATGCAGTTCTTGATGCTCACAAAGCCGTTATTTCCAAAATGAAGCCTGGTGTAAGCTGGGTGGAGATGCACAAGTTAGCAGAGAGCGTTATTATAAAGTCTTTGAAGGATGCCAACATTCTGTTAGGAACTGTAGAAGAGATGTTGGAAAAAAGACTAGGTGCAGTATTCATGCCTCATGGTCTTGGACATTTCCTTGGACTTGACACTCATGATCCAGGAGGTTATGTAAAGGGACTTGAGAGGCCTAAAGAACCAGGGCTGAGATCATTGCGAACAGTTCGTGTTCTTCAGGAAGGAATGTTTGTAACAGTTGAACCTGGATGxxxCTACTTCATTGATGCAACGTTGGTTCCAGCAATGGTGAATCCAGACACATCATCCTTCTTTAACAAGCAACTTATTCTAAGGTTCCAGAAGGTTGGAGGAGTGCGGATTGAAAGTGATGTAATTGTCACTGCAACTGGATACATT

Fln Alignment:

Contig11714___FKGIECFNTNLDILRPILTECRVFKSHLELNLLRYVNDVSSAAHVEVMRRTKVGMKEYQLESTFLHYVYMFGGCRRCSYTCICATGENSSVLHYGHAGAPNDRTLKDGDMALLDMGAEYYFYGSDITCSFPVNGKFTDDQRVVYNAVLDAHKAVISKMKPGVSWVEMHKLAESVIIKSLKDANILLGTVEEMLEKRLGAVFMPHGLGHFLGLDTHDPGGYVKGLERPKEPGLRSLRTVRVLQEGMFVTVEPGCxYFIDATLVPAMVNPDTSSFFNKQLILRFQKVGGVRIESDVIVTATG
A9NUB9__________________FKGIENFNTNLDILHPILTECRVSKSYLELNLLRYVNEVSSAAHVEVMRKTKVGMEEYQLESTFLHYVYMFGGCRHCSYTCICATGENSSVLHYGHAGAPNDRTLKDGDMALLDMGAEYYFYGSDITCSFPVNGKFTDDQRVVYNAVLGAHEAVISKMKPGVSWVDMHKLAESVIITSLKDANILLGTVEEMLEKRLGAVFMPHGLGHFLGLDTHDPGGYVKGLERPKEPGLRSLRTVRVLQEGMFVTVEPGCxYFIDATLVPAMENPDTSCFFNKQVIARFQKFGGVRIESDVIVTATG

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
48	20			80	0.995493
50		80		20	0.995493
129	12	87			0.992554
223	11			88	0.923564
224		11	88		0.923564
225	11		88		0.923564
262	33		66		0.997452
352	25		75		0.996473
353		25	75		0.996473
354	25		75		0.996473
356			75	25	0.996473
521			85	14	0.993533
522	85			14	0.993533
537	75			25	1.0
623	10	90			0.90298
624	10			90	0.90298
638	10		90		0.90298
639		10	90		0.90298
724		12		87	0.992554
725	12		87		0.992554
731	30	70			1.0
733			70	30	1.0
735	70			30	1.0
820		90		10	0.90298
865		11	88		0.923564
867			88	11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain