SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11695

Length: 1188 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11695

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10113	13/14

Source	Descriptions	Term	Type	Identity
AutoFact	EF-Hand containing protein-like n=3 Tax=Arabidopsis RepID=Q9T0I9_ARATH	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	ef-hands-containing protein	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	calcium ion binding	GO:0005509	Molecular Function	0.0	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRU9

Fln msg: Separated hits, possible frame ERROR between 231 and 330, your sequence is longer than subject: 349 - 314

Fln protein: MGRSSRSLLRTMRLLPSTWTRGSKRWTKITMADFLPKSLGRPWPPLVLPWDFLLKVPPPTPTSSMIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLKRDPVSLVTLDGRLLHDYARSSAFEFDTIATFTQMENSKPSLEIALGKITVEQGMPPASDPWVMEKIVKPAAESCGFHQLINPEARVSAEEFVEALRNVALEVASRLEKSPVTVARSEKTYDGNSIRKFVKKKDEVDKALQTIWKALPKDPRGTLPREYLRVALDMIGPAAGLPPLGVVEQMDRVVSEIFKMVEADEGGVLKQNEFNKLVLEILGSLMLQLQGNPITVSSHAVVKSDEHDIDFLPQL*

Protein Length: 350

Fln nts: AATGTAAATGGATGGTGGAATGTGTATTTG_-_ATGGGTCGAAGCTCCAGGAGTTTGTTGAGGACGATGAGGCTTTTGCCAAGTACGTGGACGAGAGGTTCGAAGCGCTGGACAAAGATCACAATGGCAGACTTTCTCCCAAAGAGCTTAGGCCGGCCGTGGCCGCCATTGGTGCTGCCCTGGGACTTCCTTCTCAAGGTTCCTCCCCCGACGCCGACATCATCTATGATCAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATTGAAAAGAGACCCGGTTTCCCTTGTCACCCTGGATGGCCGCCTCCTCCACGACTATGCCCGCTCCTCGGCTTTTGAGTTCGACACCATCGCCACATTTACCCAAATGGAAAACTCTAAACCGTCTCTGGAAATAGCTTTGGGAAAGATTACAGTGGAGCAAGGCATGCCTCCCGCCTCTGATCCATGGGTGATGGAGAAGATAGTAAAACCGGCGGCAGAGTCGTGCGGGTTCCATCAGCTAATAAATCCGGAGGCACGTGTGAGTGCCGAGGAATTTGTGGAGGCGCTCCGCAATGTGGCGTTGGAAGTGGCGTCGCGACTGGAGAAATCGCCGGTGACGGTGGCGCGCAGCGAGAAAACCTACGACGGTAATTCCATCCGAAAGTTTGTGAAGAAGAAAGATGAGGTAGATAAGGCTTTGCAGACGATATGGAAAGCATTGCCCAAGGACCCTCGGGGAACTTTGCCGAGAGAGTACCTTCGTGTTGCATTGGACATGATAGGCCCAGCTGCTGGCTTACCACCGTTGGGAGTAGTTGAACAGATGGATCGCGTTGTTTCTGAAATATTTAAAATGGTGGAAGCAGACGAGGGTGGAGTGTTGAAGCAGAATGAATTCAATAAGCTGGTACTGGAGATTCTGGGCAGCCTTATGCTTCAACTCCAGGGAAATCCAATCACTGTTTCTTCCCACGCTGTTGTTAAGTCTGATGAGCATGACATTGACTTCCTTCCTCAGCTCTGA___TGATATTGGTATATATAGATATGTATACACAGCTTCCAGTGGCTCTACATCATGCTCTACCCGGCCCTATGCCTGTTCTTGGAAAATAGATCAATAGTGGAGCATTAAGTCC

Fln Alignment:

Contig11695___TWTRGSKRWTKITMADFLPKSLGRPWPPLVLPWDFLLKVPPPTPTSSMIRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLKRDPVSLVTLDGRLLHDYARSSAFEFDTIATFTQMENSKPSLEIALGKITVEQGMPPASDPWVMEKIVKPAAESCGFHQLINPEARVSAEEFVEALRNVALEVASRLEKSPVTVARSEKTYDGNSIRKFVKKKDEVDKALQTIWKALPKDPRGTLPREYLRVALDMIGPAAGLPPLGVVEQMDRVVSEIFKMVEADEGGVLKQNEFNKLVLEILGSLMLQLQGNPITVSSHAVVKS--DEHDIDFLPQL
A9NRU9__________________TWTRGSKRWTKITMADFLPKSLGRPWPPLVLPWDFLLKAPPPTTTSYMTRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMTRDPVSLITIDGRLLHNYARSPALEFDALATFTEADNSKPSLEKALGNLTVEQGMPPSSDPWVMEKIVKPAAASCGFHRLSNPERSVGREEFVEAFRNVVLEVASRLEKLPVTVAHSEKIYDGKSIQKFVRKKDELDQALQMIWKSLPKDPRGTLPREYLRVGLDMIGPAAGLPPLGSVEQMDRVVSEIFKMVEADEGGVLKQNEFNKLILEILGSLMLQLEGNPILVSSNAAVKPVVESDKSDFLPQL

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
324	14		85		0.993533
326		85		14	0.993533
452	11		88		0.923564
454		88		11	0.923564
458			87	12	0.992554
569	16		83		0.994512
570	16	83			0.994512
571		16		66	0.988813
573	66			33	1.0
642	25		75		0.996473
644	25		75		0.996473
646		75		25	0.996473
691	33	66			0.997452
695	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain