SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11690

Length: 1809 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11690 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18332	64/67
SustainPine v2.0	sp_v2.0_unigene30398	2/67

Source	Descriptions	Term	Type	Identity
AutoFact	Branched-chain-amino-acid aminotransferase n=1 Tax=Picea sitchensis RepID=B8LQL0_PICSI	-	-	89%
FL-Next	sp=Branched-chain-amino-acid aminotransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	branched-chain-amino-acid aminotransferase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Branched-chain-amino-acid transaminase.	EC:2.6.1.42	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Valine, leucine and isoleucine degradation	00280	87%
Blast2go	Valine, leucine and isoleucine biosynthesis	00290	87%
Blast2go	Pantothenate and CoA biosynthesis	00770	87%
Blast2go	Glucosinolate biosynthesis	00966	87%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	87%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	87%
Blast2go	Metabolic pathways	01100	87%
Blast2go	Biosynthesis of secondary metabolites	01110	87%

Source	GOs	Term	Type	Identity
Blast2go	branched-chain-amino-acid transaminase activity	GO:0004084	Molecular Function	87%
Blast2go	chloroplast	GO:0009507	Cellular Component	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class IV	IPR001544	-	-
Sma3	Aminotransferase, class IV, conserved site	IPR018300	-	-
Sma3	Branched-chain amino acid aminotransferase II	IPR005786	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQL0

Fln msg:

Fln protein: MESTSIRLQSSSISSVGVHKSSCSSGGKGILSGTSWSQQVQQPLRSKFAGANLRAQMLKSGRKYGVIFGALQTQTEVTTGTFQAELGNIDWDDLGFGIKKTDYMYIMKCGQDGVFSGGDLFPFGNIELSPSAGVLNYGQGLFEGLKAYRRADGRIVLFRPEQNALRLTMGAERMCMPAPSVEQFVEAVKQTVLANKRWIPPFGKGSLYIRPLLLGSGAVLGLAPAPEFTFLIYVSPVGNYFKEGLAPIQLQVETKYHRATPGGTGNVKTIGNYAPVLKVQRSAKVEGFSDVLYLDAINKKYLEEVSSCNIFVVKDKTVSTPALQGTILPGVTRKSIIEVARSRGYEVHERLVSVDELMDADEVFCTGTAVVVSPVGSITYLDRRVTYGNGAPGKVSQELYSVLTSIQLGLADDNMGWTVEVEELVDRES*

Protein Length: 431

Fln nts: ATCTCACAAGATTCTAATCCTCGACTGATTTCATTCCAGCAGGAGTTCGTCATCGCGTCGCGGGTACACGTTTAGGCCGAGGCTTTTTCCATCAAACCTAGCCCCACGACAACCACGAGTTTAGAGGGCTTTGGCGAGTTGGGCG_-_ATGGAGAGTACGAGCATTCGCTTACAGTCATCTTCTATTAGTAGCGTGGGTGTTCATAAATCTTCTTGCTCTTCGGGGGGAAAAGGGATTTTATCAGGCACTTCATGGAGCCAACAAGTGCAGCAGCCTTTGAGGTCTAAGTTTGCAGGGGCCAATCTCAGGGCCCAAATGCTGAAGTCTGGAAGGAAATATGGTGTGATTTTTGGAGCATTACAAACGCAAACAGAAGTAACCACTGGTACCTTTCAGGCTGAGCTAGGTAACATTGATTGGGATGACCTAGGGTTTGGAATAAAAAAAACTGATTATATGTACATCATGAAATGTGGCCAAGATGGAGTATTTTCTGGAGGAGACCTTTTCCCTTTCGGAAATATTGAACTAAGCCCGTCAGCTGGCGTCTTGAATTATGGACAGGGTTTATTTGAAGGCTTAAAAGCCTATAGGAGAGCTGATGGACGGATCGTGCTCTTTCGTCCAGAACAGAATGCATTGCGACTGACAATGGGTGCAGAGCGCATGTGTATGCCAGCTCCATCAGTAGAACAATTTGTGGAGGCTGTAAAACAAACAGTGTTGGCCAACAAGCGCTGGATACCACCCTTTGGCAAAGGCTCTCTTTATATACGCCCACTACTTCTTGGTAGTGGAGCTGTTTTAGGACTTGCTCCAGCTCCAGAGTTTACTTTTCTTATATATGTTTCCCCTGTTGGAAACTATTTCAAGGAAGGGTTGGCACCAATTCAGTTGCAGGTTGAAACAAAATACCATCGTGCCACTCCAGGTGGCACTGGAAATGTCAAAACTATAGGCAATTATGCACCAGTGTTAAAAGTACAACGTAGTGCTAAAGTAGAAGGATTTTCTGATGTGCTGTATCTTGATGCGATCAATAAAAAGTACCTTGAGGAAGTCTCCTCATGTAACATCTTTGTGGTGAAGGATAAAACTGTTTCTACTCCAGCATTGCAGGGAACCATACTTCCTGGAGTTACAAGGAAAAGTATCATTGAGGTGGCTCGTAGTCGAGGTTATGAGGTCCATGAGCGCTTAGTATCTGTGGATGAGTTGATGGATGCTGATGAGGTCTTCTGCACAGGCACGGCAGTGGTTGTTTCTCCTGTGGGAAGTATCACATATCTTGATAGAAGAGTGACATATGGCAATGGAGCTCCAGGAAAAGTTTCACAGGAACTGTATTCAGTTCTTACAAGCATTCAGCTGGGTTTGGCCGACGATAACATGGGATGGACAGTCGAGGTGGAGGAGCTAGTTGACAGAGAATCCTAA___TTGTATGCAAATTGCATATTATTAGGCAGTGGCGTTAAGGCCTACAATGTCATTGTTTTTGATACGATGATCCAAGGAGCTGATTTCATTCCGATAAAATTATAATTTATGAGCATTGGTAGACACGATTTGTATGTGATCTTTTTCTACCATTTGTTTGACCAGTTTAATGTTATCTTTTTGAATGGTAAATATAGGGTGTTTATTATAAGACCGGCCTTAAAATCTTGTCCACAGTGATGATTCTTTATTGTGGTCCCAACAATTTTATAAGAGGCAGAGTGGGAACCAGCTATCCCCTAATAAACAAATAGGGTGGTGTAATTAATACACTTGGTTTATTTGGAGATAGAATGCATAGAGTGTGTTCGGCC

Fln Alignment:

Contig11690___TSWSQQVQQPLRSKFAGANLRAQMLKSGRKYGVIFGALQTQTEVTTGTFQAELGNIDWDDLGFGIKKTDYMYIMKCGQDGVFSGGDLFPFGNIELSPSAGVLNYGQGLFEGLKAYRRADGRIVLFRPEQNALRLTMGAERMCMPAPSVEQFVEAVKQTVLANKRWIPPFGKGSLYIRXXXXXXXXXXXXXXXPEFTFLIYVSPVGNYFKEGLAPIQLQVETKYHRATPGGTGNVKTIGNYAPVLKVQRSAKVEGFSDVLYLDAINKKYLEEVSSCNIFVVKDKTVSTPALQGTILPGVTRKSIIEVARSRGYEVHERLVSVDELMDADEVFCTGTAVVVSPVGSITYLDRRVTYGNGAPGKVSQELYSVLTSIQLGLADDNMGWTVEVE
B8LQL0__________________TSWSPQVQQHLRSKFAGANLRAQMLKSGRKYCVIFGALPTQAEVATSAFEDELSNIDWDDLGFGIRKTDYMYLMKCGEDGVFSGGDLFPFGNIELSPSAGVLNYGQGLFEGLKAYRRADGRIVLFRPEENALRLTTGAERMCMAAPSVEQFVEAVKQTVLANKRWIPPFGKGSLYIRPLLLGSGAVLGLAPAPEVTFLIYVSPVGNYFKEGLAPIQLQVETKYHRATPGGTGNVKTIGNYAPVLKVQRSAKTEGFSDVLYLDAINKKYLEEVSSCNIFVVKDKTVSTPALHGTILSGVTRKSIIEVARSRGYEVHERLVSVDELMDADEVFCTGTAVVVSPVGSITYLDRRVTYGNGAPGEVSQELYSALTSIQMGLADDNMGWTIEVK

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
328	11	88			0.923564
396	57	42			1.0
452	20		80		0.995493
1063	83			16	0.994512
1064	83			16	0.994512
1135	12		87		0.992554
1139			87	12	0.992554
1250	12	87			0.992554
1252	12			87	0.992554
1253			87	12	0.992554
1303	20		80		0.995493
1497		83		16	0.994512
1498	83	16			0.994512
1500	16			83	0.994512
1503			83	16	0.994512
1504	16		83		0.994512
1506	16	83			0.994512
1507		83		16	0.994512
1677	20	80			0.995493
1679		80	20		0.995493
1680			80	20	0.995493
1682	20	80			0.995493
1697	20			80	0.995493
1699	20		80		0.995493
1701			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain