SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11681

Length: 543 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene11681
CTTGATGTTCATCTGGATGTGCAGAACACGGGCAGCAGAGATGGAGGGCATGCTGTGCTCTTGTTTTCTAGCCCCCCTACAGTTCATGGGGCTCCACAGAAGAACATGGTGGGATTCAGAAAGGTCCATGTTGGTGCAGGAGCCACAGAAAGAGTGCATTTCAGCATTGATGTTTGCAAAGATCTGAGCATTGCAGATGAGAGTGGTGCCAAGAAATTGCCACTGGGTTCTCATCTTCTTCATGTTGGAGATGTGCAGCATTCCCTTAATCTTCAAATTGAATGACAGGAGATTAAGGCTTTAAATATCAATTGATTTCAGATTAGAGTGATGCAACAGCTACAACTTATAAAAGCTCCTGGTTGTTGCTGTTGGGTAATAATAGTTTGGGTAATGGTCGTTTATTACTGGGAAGCCAATGTAATTGTAGATACCGTGGTGCGTTCTGGTGGAGTCACTTCAAATATGAAAGTTTGTAAAATGGCAACATAGACTTTTCGATCAATATGAACAAGTACATTCAACTGTAGCCCATTTGGGAAA

Ace file of the UniGene biog3_v1.0_unigene11681 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene168	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	[G] COG1472 Beta-glucosidase-related glycosidases	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	beta-xylosidase alpha-l-arabinofuranosidase 2-like	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xylan 1,4-beta-xylosidase.	EC:3.2.1.37	-	0.0	74%

Source	KEGGs	Term	Identity
Blast2go	Starch and sucrose metabolism	00500	74%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	74%
Blast2go	Metabolic pathways	01100	74%

Source	GOs	Term	Type	Identity
Blast2go	xylan catabolic process	GO:0045493	Biological Process	74%
Blast2go	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	74%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	74%
Blast2go	cell wall	GO:0005618	Cellular Component	74%
Blast2go	apoplast	GO:0048046	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	Parathyroid hormone/parathyroid hormone-related protein	IPR001415	-	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABI5

Fln msg: your sequence is shorter than subject: 95 - 304

Fln protein: LDVHLDVQNTGSRDGGHAVLLFSSPPTVHGAPQKNMVGFRKVHVGAGATERVHFSIDVCKDLSIADESGAKKLPLGSHLLHVGDVQHSLNLQIE*

Protein Length: 96

Fln nts: CTTGATGTTCATCTGGATGTGCAGAACACGGGCAGCAGAGATGGAGGGCATGCTGTGCTCTTGTTTTCTAGCCCCCCTACAGTTCATGGGGCTCCACAGAAGAACATGGTGGGATTCAGAAAGGTCCATGTTGGTGCAGGAGCCACAGAAAGAGTGCATTTCAGCATTGATGTTTGCAAAGATCTGAGCATTGCAGATGAGAGTGGTGCCAAGAAATTGCCACTGGGTTCTCATCTTCTTCATGTTGGAGATGTGCAGCATTCCCTTAATCTTCAAATTGAATGA___CAGGAGATTAAGGCTTTAAATATCAATTGATTTCAGATTAGAGTGATGCAACAGCTACAACTTATAAAAGCTCCTGGTTGTTGCTGTTGGGTAATAATAGTTTGGGTAATGGTCGTTTATTACTGGGAAGCCAATGTAATTGTAGATACCGTGGTGCGTTCTGGTGGAGTCACTTCAAATATGAAAGTTTGTAAAATGGCAACATAGACTTTTCGATCAATATGAACAAGTACATTCAACTGTAGCCCATTTGGGAAA

Fln Alignment:

Contig11681___VQNTGSRDGGHAVLLFSSPPTVH-GAPQKNMVGFRKVHVGAGATERVHFSIDVCKDLSIADESGAKKLPLGSHLLHVGDVQHSLNL
D5ABI5__________________VRNHDKMDGRHAVLLYSKSPATHKGAPQKQLIGFRSVHVQGKHTAKVTFVVKPCDHFSTVEENGQRLLAIGSHSLIVGDTQYPVSL

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
125	40			60	1.0
129		60		40	1.0
243	85	14			0.993533
245			85	14	0.993533
246		85		14	0.993533
345	16	83			0.994512
348		80	20		0.995493
355	40		60		1.0
358	14	85			0.993533
360			85	14	0.993533
361	85		14		0.993533
433		83	16		0.994512
434	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain