SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11680

Length: 829 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11680

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5254	146/155
SustainPine v2.0	sp_v2.0_unigene24330	1/155
SustainPine v2.0	sp_v2.0_unigene24550	1/155
SustainPine v2.0	sp_v2.0_unigene60597	2/155
SustainPine v2.0	sp_v2.0_unigene63513	3/155

Source	Descriptions	Term	Type	Identity
AutoFact	Non-specific lipid-transfer protein n=4 Tax=Pinus RepID=NLTP_PINTA	-	-	95%
FL-Next	sp=Non-specific lipid-transfer protein; Pinus resinosa (Red pine) (Norway pine).	-	-	96%
Blast2go	nonspecific lipid transfer protein	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Acyltransferases, Transferring groups other than amino-acyl groups.	EC:2.3.1.-	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid biosynthesis	00061	83%
Blast2go	Tetracycline biosynthesis	00253	83%
Blast2go	Lysine degradation	00310	83%
Blast2go	Arginine and proline metabolism	00330	83%
Blast2go	Histidine metabolism	00340	83%
Blast2go	Tyrosine metabolism	00350	83%
Blast2go	Benzoate degradation	00362	83%
Blast2go	Lipopolysaccharide biosynthesis	00540	83%
Blast2go	Glycerophospholipid metabolism	00564	83%
Blast2go	Ether lipid metabolism	00565	83%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	83%
Blast2go	Toluene degradation	00623	83%
Blast2go	Naphthalene degradation	00626	83%
Blast2go	Aminobenzoate degradation	00627	83%
Blast2go	Ethylbenzene degradation	00642	83%
Blast2go	Butanoate metabolism	00650	83%
Blast2go	Methane metabolism	00680	83%
Blast2go	Limonene and pinene degradation	00903	83%
Blast2go	Diterpenoid biosynthesis	00904	83%
Blast2go	Carotenoid biosynthesis	00906	83%
Blast2go	Anthocyanin biosynthesis	00942	83%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	83%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	83%
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	83%
Blast2go	Betalain biosynthesis	00965	83%
Blast2go	Biosynthesis of unsaturated fatty acids	01040	83%
Blast2go	Biosynthesis of type II polyketide backbone	01056	83%
Blast2go	Biosynthesis of terpenoids and steroids	01062	83%
Blast2go	Metabolic pathways	01100	83%
Blast2go	Biosynthesis of secondary metabolites	01110	83%

Source	GOs	Term	Type	Identity
Blast2go	lipid transport	GO:0006869	Biological Process	83%
Blast2go	transferase activity, transferring acyl groups other than amino-acyl groups	GO:0016747	Molecular Function	83%
Blast2go	lipid binding	GO:0008289	Molecular Function	83%

Source	InterPros	Term	Type	Identity
Sma3	Plant lipid transfer protein/Par allergen	IPR000528	-	-
Sma3	Transferase	IPR003480	-	-
Sma3		IPR003612	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
30	12			87	0.992554
31	12			87	0.992554
158	4		96		0.99411
159		4		96	0.99411
160	4		96		0.99411
162			96	4	0.99411
221		96		3	0.993037
245	95	4			0.99692
248			95	4	0.997218
623	3			96	0.988113
624		3	96		0.988113
626		1	94	3	0.924724
627	3			96	0.988113
655	83	4		12	1.0
656	85	9		4	0.999726
657	85	4		9	0.999726
658	85			15	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain