SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11663

Length: 799 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11663

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27935	18/18

Source	Descriptions	Term	Type	Identity
AutoFact	V-type proton ATPase subunit d1 n=14 Tax=Spermatophyta RepID=VA0D1_ARATH	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	v-type proton atpase subunit d2	-	-	95%

Source	GOs	Term	Type	Identity
Blast2go	proton transport	GO:0015992	Biological Process	95%
Blast2go	catalytic activity	GO:0003824	Molecular Function	95%
Blast2go	plant-type vacuole	GO:0000325	Cellular Component	95%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	95%
Blast2go	plasma membrane	GO:0005886	Cellular Component	95%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, V0 complex, subunit D	IPR016727	-	0.0	-
Sma3	ATPase, V0/A0 complex, subunit C/D	IPR002843	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZI9

Fln msg: Distance to subject end: 38 aas, atg_distance in limit (1-15): atg_distance = 2, your sequence is shorter than subject: 260 - 305

Fln protein: MYGPYLQNEPSPLHTSTMLEKCTLKLVDEYKHLLSQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECFTSEDLDDMNIELMRNTLYKAYLEDFYKSCKKLGGATAEIMSDLLSFEADRRAINITINSIGTELTRDDRRKLYSNFGLLHPYGHEELAVCEDIEQVRGAMEKYPPYQSMFSKISYGESQMLDKIFYEEEVKRLCLAFEQQFHYG

Protein Length: 261

Fln nts: CAGTCCAAAGTGCAATC_-_ATGTACGGCCCCTACCTGCAGAACGAACCTTCACCATTGCACACATCAACAATGTTGGAGAAATGTACTCTCAAATTGGTGGATGAATACAAGCACCTGCTTTCTCAAGCAACTGAGCCACTGTCAACATTTCTTGAATATATAACGTATGGTCATATGATTGATAATGTTGTCCTCATTGTCACTGGCACTCTGCATGAAAGAGATGTCCAGGAATTGCTAGAAAAATGTCATCCTCTGGGCATGTTTGACAGTATTGCAACACTTGCAGTTGCCCAGAATATGCGAGAACTATATAGACTGGTGCTTGTTGACACACCTTTAGCTCCGTACTTTTCTGAATGTTTTACTTCTGAGGATCTGGATGATATGAATATAGAACTTATGCGGAACACACTCTATAAAGCTTATCTGGAAGACTTCTACAAGTCTTGCAAGAAATTGGGGGGAGCTACTGCTGAAATAATGTCTGATTTATTGTCATTTGAAGCTGATCGACGAGCCATAAACATTACAATAAACAGTATTGGAACAGAATTGACTCGTGATGATCGACGGAAGCTTTATTCTAATTTTGGACTGCTGCATCCTTATGGTCATGAAGAGCTTGCTGTCTGCGAAGATATTGAACAGGTCCGGGGAGCTATGGAGAAGTATCCACCATATCAGTCAATGTTTTCTAAAATATCTTATGGAGAAAGTCAGATGCTGGACAAGATTTTCTATGAAGAGGAAGTGAAAAGGCTCTGTCTGGCATTTGAACAACAGTTTCACTATGGTGT

Fln Alignment:

Contig11663___SAIMYGPYLQNEPSPLHTSTMLEKCTLKLVDEYKHLLSQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECFTSEDLDDMNIELMRNTLYKAYLEDFYKSCKKLGGATAEIMSDLLSFEADRRAINITINSIGTELTRDDRRKLYSNFGLLHPYGHEELAVCEDIEQVRGAMEKYPPYQSMFSKISYGESQMLDKIFYEEEVKRLCLAFEQQFHYG
A9NZI9__________________SATDYGPYLQNEPSPLHTATIVEKCTLKLVDEYKHLLSQATEPLSTFLEYIMYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIELMRNTLYKAYLEDFYKFCKKMGGATAEIMCDLLSFEADRRAINITINSIGTELTRDDRRKLYSNFGLLHPYGHEELAVCDDIEQVRGAMEKYPSYQSMFSKISYGESQMLDKFFYEEEVKRLCLAFEQQFHYG

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
215	25	75			0.996473
282		90	10		0.90298
283	90			10	0.90298
285		10		90	0.90298
322		11	88		0.923564
323	11		88		0.923564
325			87	12	0.992554
401	20	80			0.995493
404	66		33		0.997452
405		33		66	0.997452
407		66		33	0.997452
408			66	33	0.997452
414		66		33	0.997452
527	66			33	0.997452
553		85		14	0.993533
630		28	71		1.0
689			85	14	0.993533
725	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain