SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11647

Length: 682 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11647 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3345	10/17
SustainPine v2.0	sp_v2.0_unigene17299	7/17

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=40S ribosomal protein S23; AltName: Full=S12 gb\|AAA79921.1\| putative 40S ribosomal protein s12 [Fragaria x ananassa]	-	-	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	40s ribosomal protein s23	-	-	97%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	97%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	97%
Blast2go	small ribosomal subunit	GO:0015935	Cellular Component	97%

Source	InterPros	Term	Type	Identity
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Ribosomal protein S23, eukaryotic/archaeal	IPR005680	-	-

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
290	25		75		0.996473
388	20		80		0.995493
391			80	20	0.995493
427		85		14	0.993533
461	16	83			0.994512
464		83		16	0.994512
503	20	80			0.995493
506	80			20	0.995493
507	80			20	0.995493
573	14		85		0.993533
576			85	14	0.993533
577			85	14	0.993533
677		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
107	119	AAGC AAGC AAGC A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain