SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11640

Length: 1894 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11640 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12087	48/106
SustainPine v2.0	sp_v2.0_unigene16063	49/106
SustainPine v2.0	sp_v2.0_unigene16209	6/106
SustainPine v2.0	sp_v2.0_unigene80552	1/106

Source	Descriptions	Term	Type	Identity
AutoFact	Adenylosuccinate synthetase 2, chloroplastic n=1 Tax=Ricinus communis RepID=PURA2_RICCO	-	-	72%
FL-Next	sp=Adenylosuccinate synthetase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	adenylosuccinate synthetase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenylosuccinate synthase.	EC:6.3.4.4	-	0.0	85%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	85%
Blast2go	Alanine, aspartate and glutamate metabolism	00250	85%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	85%
Blast2go	Metabolic pathways	01100	85%

Source	GOs	Term	Type	Identity
Blast2go	AMP biosynthetic process	GO:0006167	Biological Process	85%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	85%
Blast2go	adenylosuccinate synthase activity	GO:0004019	Molecular Function	85%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	85%
Blast2go	apoplast	GO:0048046	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Adenylosuccinate synthetase	IPR001114	-	-
Sma3	Exostosin-like	IPR004263	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	EGF, extracellular	IPR013111	-	-
Sma3	Adenylosuccinate synthase, active site	IPR018220	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8A1

Fln msg: your sequence is longer than subject: 503 - 309

Fln protein: MASALISDLCVPNLHGFSQDKKKRQQGLRSGFAHSVNLHLAKGRIVLQSRRIKCNASVVEADAIAEAEKAEDPFKSLSQVCAVLGSQWGDEGKGKLVDVLAQRYDIVARCQGGANAGHTIYNSEGKKFALHLVPSGILNEKALCVIGNGAVVHLPGLFEEIEGLESNGVSCKGRLLISDRAHLLFDFHQIIDGMREAELAGSLIGTTKRGIGPCYASKAIRNGIRVSDLRHMDTFPEKLDILLHDAASRFKGFEYSKSMLQTEVEHYKRYSEQIEPYITDTVHLMNDAFSSGKKILVEGGQATMLDVDFGTYPFVTSSNPSAGGICTGLGISPRHIGDMIGVAKAYTTRVGSGPYPTELLDEAGEDLRSAGHEYGTTTGRPRRCGWLDLVALKYSCQINGFSALNLTKLDVLSGLSRIRLGVTYKGPDGNVLKSFPADLDLLQKVEVIYEDLPGWQADISKVRRYQDLPSAACLYVERIESLLGIPIDYIGVGPGRDALIVK*

Protein Length: 504

Fln nts: AATGTCTCTTCTCAGAAATATTTAGCATCCGTGTATAAAGTTGAATGTTTAGCCGTTTCCTTCTGTTCAAATCCTTCAGTTTCAGCCCCGTTTACCCCAGTTCCGTTCTGGATTACCCTCCGAGATCAAAAAAGCTATCTGTCTGAATTGCCAGGGATTTGGGGTTTTGAAGGTTGCTCAATCCGCTGTCCGTGGGAATAA_-_ATGGCATCTGCGCTGATTAGCGATCTCTGTGTTCCGAATTTGCACGGATTTTCGCAGGATAAGAAAAAGAGGCAACAGGGGTTGCGGTCAGGGTTTGCGCATTCTGTGAACTTGCATTTGGCTAAAGGTCGAATTGTACTGCAGAGTAGAAGGATAAAATGCAATGCCAGCGTCGTGGAGGCCGATGCCATTGCTGAGGCAGAGAAAGCGGAAGATCCTTTTAAATCCCTGAGTCAAGTGTGTGCAGTGCTGGGAAGTCAGTGGGGTGACGAAGGAAAGGGCAAGCTCGTTGACGTTTTAGCACAGCGCTATGATATTGTGGCCCGTTGTCAGGGAGGGGCAAATGCAGGTCACACCATATACAATAGCGAGGGAAAGAAATTTGCTCTTCACCTTGTCCCTTCTGGAATACTCAATGAAAAGGCCCTATGCGTTATTGGGAATGGAGCCGTTGTGCATCTTCCAGGACTATTTGAAGAGATAGAGGGGCTTGAGTCTAATGGAGTTTCTTGCAAAGGAAGACTGTTGATTTCTGACCGTGCTCATTTACTATTTGATTTCCATCAAATTATTGATGGAATGAGAGAAGCAGAACTTGCAGGGTCGTTAATTGGAACGACAAAAAGAGGGATTGGTCCTTGCTATGCAAGCAAGGCAATCCGGAATGGCATTCGGGTAAGTGATTTGAGGCACATGGATACATTTCCTGAGAAGTTGGATATTCTTTTGCATGATGCGGCATCCCGTTTTAAAGGCTTTGAGTATAGTAAAAGCATGTTACAGACTGAAGTGGAGCATTACAAGAGATATTCTGAGCAAATAGAACCTTATATTACTGACACTGTTCATTTGATGAATGATGCATTCTCAAGCGGGAAGAAGATTTTGGTTGAAGGCGGCCAGGCAACCATGTTAGATGTCGATTTTGGAACTTATCCATTTGTCACTTCTTCTAATCCATCTGCCGGTGGAATCTGTACTGGACTTGGTATTTCTCCAAGACATATTGGTGATATGATTGGTGTGGCTAAAGCATACACAACAAGAGTTGGTTCAGGTCCTTACCCGACAGAACTCTTGGATGAAGCGGGTGAAGATCTTCGATCAGCTGGACATGAATATGGCACCACAACTGGCCGGCCTCGTCGTTGTGGTTGGCTAGATCTGGTTGCACTTAAATATTCTTGTCAAATCAATGGTTTCTCAGCACTTAATCTGACAAAGCTTGACGTACTTTCTGGGTTATCTCGAATTAGGCTTGGGGTAACCTATAAAGGGCCTGATGGAAATGTGTTGAAATCTTTTCCTGCGGACCTTGACCTTCTGCAAAAAGTAGAGGTTATTTACGAAGATCTGCCTGGATGGCAGGCTGATATATCTAAAGTGAGAAGATATCAAGACTTACCATCTGCTGCTTGCCTCTATGTGGAAAGGATCGAGAGTTTACTTGGAATACCAATCGATTATATTGGTGTTGGGCCAGGCCGTGATGCTTTAATAGTGAAGTAA___TAGGATCAACAGATTTTAAAGTCATCCCATGGAGTTTGCTGTCCAAGAAGCAGGTCAAAAACATGCATGGGAACTTTTAATGGCCTAACATTCCCTGTGTCATTTTTGGCTTTTGTGACTTTTTTATATGTCCCTTGTCTAGAACAACTTTGGTTAGTCTAAGCAGGAATAAATTCAAGACATT

Fln Alignment:

Contig11640___MREAELAGSLIGTTKRGIGPCYASKAIRNGIRVSDLRHMDTFPEKLDILLHDAASRFKGFEYSKSMLQTEVEHYKRYSEQIEPYITDTVHLMNDAFSSGKKILVEGGQATMLDVDFGTYPFVTSSNPSAGGICTGLGISPRHIGDMIGVAKAYTTRVGSGPYPTELLDEAGEDLRSAGHEYGTTTGRPRRCGWLDLVALKYSCQINGFSALNLTKLDVLSGLSRIRLGVTYKGPDGNVLKSFPADLDLLQKVEVIYEDLPGWQADISKVRRYQDLPSAACLYVERIESLLGIPIDYIGVGPGRDALIVK
D5A8A1__________________MREAELAGSLIGTTKRGIGPCYASKVIRNGIRVSDLRHMDTFPEKLDILLHDAASRFKGFEYSKSMLQTEVEHYKRYSERVEPYIAVTVHLMHDAFSSGKRILVEGGQATMLDVDFGTYPFVTSSNPSAGGICTGLGIAPRHIGDLIGVAKAYTTRVGSGPYPTELLDEAGENLRSAGYEYGTTTGRPRRCGWLDLVALKYSCQINGFSTLNLTKLDVLSGLSRIRLGVAYKGPDGNVLPSFPADLDLLQQVEVIYENLPGWQADISSVRRYQDLPSAACLYVERIESLLGIPINYIGVGPSRDALIVK

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
214			83	16	0.994512
302			16	83	0.994512
310	14	85			0.993533
312			14	85	0.993533
329		85		14	0.993533
347	14		85		0.993533
362	20			80	0.995493
427		33		66	1.0
456			83	16	0.994512
457	80			20	0.995493
557			50	50	1.0
585	20		80		0.995493
586	20	80			0.995493
616	66			33	0.997452
617			66	33	0.997452
700	33	66			0.997452
772		80	20		0.995493
788		80		20	0.995493
818		80		20	0.995493
831	16		83		0.994512
835		83		16	0.994512
854	20		80		0.995493
859		80		20	0.995493
863	88		11		0.923564
868		11	88		0.923564
876		77		22	0.999999
877	12		87		0.992554
880		87		12	0.992554
893		12	87		0.992554
898	37		62		1.0
928	14			85	0.993533
929	85			14	0.993533
956		50	50		1.0
1003	25		75		0.996473
1005	25	75			0.996473
1007		75		25	0.996473
1025	33		66		1.0
1043	33		66		0.997452
1750	20			80	0.995493
1751			20	80	0.995493
1753	80			20	0.995493
1758			80	20	0.995493
1759	80			20	0.995493
1865		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain