SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11615

Length: 2505 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene11615
ATATTGATGCAAACGGTATTCTTTCAGTCAATCTCTCCCCAAGGGTTTCAGTTCAGAGATTTCATCCATGGCGGCTGCGGCTCATGTTCATTTGTTCGCAGCTGGCATACCTCATACCAACACCGGTTCTTCCAGAAGATCCAGCCGTGGAAATCGAAATAGCGCCTTCTTTGGCCTCGGTCTGGGTAAAAATCCCGTCTTCAATGGTGGATTTGGCAGCTTGCGCAGCAAGCAGCAGCAGCAATCCAGAAGGCGGGCCGCGGGGCCTCTGAGGGTTGTCTGTGAGAAGGTCGTTGGAATCGATTTGGGGACTACGAATTCGGCCGTGGCGGCCATGGAAGGAGGTAAGCCCACCATCATCACTAATGCTGAGGGCCAGCGAACGACTCCCTCTGTGGTTGCTTACTCCAAGAACGGGGACCGTCTCGTCGGGCAAATTGCGAAGCGGCAGGCCGTGGTGAACCCTGAGAACACCTTTTTCTCCGTGAAGAGGTTCATTGGGAGAAAGATGTCAGAGGTGTCCGAGGAGTCGAAGCAGGTCTCCTATCGCGTTATCCGTGACGACAATGGTAATGTCAAGCTCGATTGTCCTGCAATTGGTAAACAATTCGCGGCCGAAGAGATTTCTGCGCAGGTTTTGAGAAAGCTCGTTGATGATGCCACCAAGTTTTTAAATGATAAGGTCAACAAGGCTGTGATAACTGTTCCTGCATATTTCAACGATTCTCAGAGAACAGCCACAAAGGATGCAGGCCGGATTGCTGGCTTGGAAGTCCTGAGAATTATCAATGAACCCACTGCTGCTTCATTGGCCTATGGGTTCGAGAAGAAGAATAATGAAACAATACTTGTGTTTGATCTTGGTGGTGGGACATTTGATGTCTCAGTGCTTGAGGTTGGAGATGGTGTATTTGAGGTGCTTTCCACTTCAGGTGACACACATCTGGGAGGAGATGACTTCGATAAGAGAATTGTTGATTGGCTGGCCTCCAGCTTTAAGAAAGATGAGGGAATCGACTTGTTGAAAGACAAACAAGCTCTTCAACGTCTAACTGAAACCGCTGAGAAAGCTAAGATTGAATTGTCATCACTTACCCAAACAAGCATCAGTTTGCCATTCATAACAGCCACTGCAGATGGGCCCAAGCATATTGAGACAACCCTTACACGGGTCAAATTTGAAGAGCTGTGCTCTGATTTGCTTGACAGGCTGAAGACTCCTGTCGAGAATGCATTGAGAGATGCCAAGTTGTCTTATAAGGACTTGGATGAAATTATTTTGGTTGGTGGGTCTACTAGAATTCCCGCTGTTCAGGATCTGGTCAAGAGAGTGACCAACAAAGAGCCAAATGTCACTGTCAACCCAGATGAGGTTGTAGCTCTAGGGGCAGCAGTCCAGGCTGGAGTGCTAGCGGGTGATGTTAGCGACATCGTGCTTCTTGATGTTACTCCGCTGTCACTTGGGCTGGAAACTCTTGGTGGTGTAATGACGAAAATCATTCCTCGGAACACTACACTACCAACCTCAAAATCTGAGGTGTTTTCTACGGCTGCTGATGGTCAGACAAGTGTTGAAATTAATGTTCTGCAAGGTGAACGAGAATTTGTCAAGGACAACAAGTCGCTCGGGAGTTTTCGGTTGGATGGAATTCCTCCTGCTCCACGAGGTGTACCTCAAATAGAGGTGAAGTTTGATATTGATGCAAACGGTATTCTTTCAGTCGCTGCTGTGGACAAAGGCACTCAAAAGAAGCAGGATATAACAATTACCGGTGCTAGCACCTTGCCAACTGATGAGGTTGAAAAAATGGTGAAAGAGGCTGAGAGATTTTCTAAAGAAGACAAAGAGAAGAGAGAAGCTATTGATACAAAGAATCAAGCTGATTCTGTCGTCTATCAGACTGAGAAGCAGTTGAAGGAACTTGGTGATAAGGTACCCGCAGAAGTCAAGGACAAGGTGGAAGCTAAGCTGAAAGAACTTAAAGATGCAATTGCCAGTGGGTCAACGCAGTCAATGAAGGATACGATGGCAGCTCTCAACCAAGAAGTGATGCAGTTAGGGCAATCTCTTTACAACCAGCCTGGAGCTGCTGGCGGACCAACCGCTGGCGGGGAAGCAGGGTCTGGTAGTACTGGAGGAAAAACATCTGGGGGTGATGATGTTATAGATGCTGATTTTACAGACAGCAACTAAACCCACTATAATGGGTTACTTGATTTCTTGGAATAATTTTCATTCTAGTTTCAGAGTTGGCCCGTAGAGAACATGTTTAGTTGTGAATGGAGCTTTTTGTGATAGAACATTTTACCTCTAGCATTTGAAATACGTCTTATGTTTTGTAGATAAAATTTATCACTCCATTCAAAAGGTGTTTCAATCGGGGACAGAGCAGAATACCGCCAACAAGATGTTTGTTTCACGGTTCTCATCTTTTTACCCGCAAGAAATATATAGTGGGATGTACCTTGAGTTCTTTAATGAATTTTAAATAATCAATGCACATT

Ace file of the UniGene biog3_v1.0_unigene11615 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15311	29/29

Source	Descriptions	Term	Type	Identity
AutoFact	Chloroplast HSP70 n=4 Tax=rosids RepID=A2TJV6_CUCSA	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	stromal 70 kda heat shock-related chloroplastic-like	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	94%
Blast2go	response to heat	GO:0009408	Biological Process	94%
Blast2go	protein targeting to chloroplast	GO:0045036	Biological Process	94%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	94%
Blast2go	ATP binding	GO:0005524	Molecular Function	94%
Blast2go	protein binding	GO:0005515	Molecular Function	94%
Blast2go	mitochondrion	GO:0005739	Cellular Component	94%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	94%
Blast2go	thylakoid	GO:0009579	Cellular Component	94%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	94%
Blast2go	nucleus	GO:0005634	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Sma3	Chaperone DnaK	IPR012725	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Heat shock protein 70	IPR013126	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLU0

Fln msg:

Fln protein: MAAAAHVHLFAAGIPHTNTGSSRRSSRGNRNSAFFGLGLGKNPVFNGGFGSLRSKQQQQSRRRAAGPLRVVCEKVVGIDLGTTNSAVAAMEGGKPTIITNAEGQRTTPSVVAYSKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVSEESKQVSYRVIRDDNGNVKLDCPAIGKQFAAEEISAQVLRKLVDDATKFLNDKVNKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASSFKKDEGIDLLKDKQALQRLTETAEKAKIELSSLTQTSISLPFITATADGPKHIETTLTRVKFEELCSDLLDRLKTPVENALRDAKLSYKDLDEIILVGGSTRIPAVQDLVKRVTNKEPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVKDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVAAVDKGTQKKQDITITGASTLPTDEVEKMVKEAERFSKEDKEKREAIDTKNQADSVVYQTEKQLKELGDKVPAEVKDKVEAKLKELKDAIASGSTQSMKDTMAALNQEVMQLGQSLYNQPGAAGGPTAGGEAGSGSTGGKTSGGDDVIDADFTDSN*

Protein Length: 710

Fln nts: ATATTGATGCAAACGGTATTCTTTCAGTCAATCTCTCCCCAAGGGTTTCAGTTCAGAGATTTCATCC_-_ATGGCGGCTGCGGCTCATGTTCATTTGTTCGCAGCTGGCATACCTCATACCAACACCGGTTCTTCCAGAAGATCCAGCCGTGGAAATCGAAATAGCGCCTTCTTTGGCCTCGGTCTGGGTAAAAATCCCGTCTTCAATGGTGGATTTGGCAGCTTGCGCAGCAAGCAGCAGCAGCAATCCAGAAGGCGGGCCGCGGGGCCTCTGAGGGTTGTCTGTGAGAAGGTCGTTGGAATCGATTTGGGGACTACGAATTCGGCCGTGGCGGCCATGGAAGGAGGTAAGCCCACCATCATCACTAATGCTGAGGGCCAGCGAACGACTCCCTCTGTGGTTGCTTACTCCAAGAACGGGGACCGTCTCGTCGGGCAAATTGCGAAGCGGCAGGCCGTGGTGAACCCTGAGAACACCTTTTTCTCCGTGAAGAGGTTCATTGGGAGAAAGATGTCAGAGGTGTCCGAGGAGTCGAAGCAGGTCTCCTATCGCGTTATCCGTGACGACAATGGTAATGTCAAGCTCGATTGTCCTGCAATTGGTAAACAATTCGCGGCCGAAGAGATTTCTGCGCAGGTTTTGAGAAAGCTCGTTGATGATGCCACCAAGTTTTTAAATGATAAGGTCAACAAGGCTGTGATAACTGTTCCTGCATATTTCAACGATTCTCAGAGAACAGCCACAAAGGATGCAGGCCGGATTGCTGGCTTGGAAGTCCTGAGAATTATCAATGAACCCACTGCTGCTTCATTGGCCTATGGGTTCGAGAAGAAGAATAATGAAACAATACTTGTGTTTGATCTTGGTGGTGGGACATTTGATGTCTCAGTGCTTGAGGTTGGAGATGGTGTATTTGAGGTGCTTTCCACTTCAGGTGACACACATCTGGGAGGAGATGACTTCGATAAGAGAATTGTTGATTGGCTGGCCTCCAGCTTTAAGAAAGATGAGGGAATCGACTTGTTGAAAGACAAACAAGCTCTTCAACGTCTAACTGAAACCGCTGAGAAAGCTAAGATTGAATTGTCATCACTTACCCAAACAAGCATCAGTTTGCCATTCATAACAGCCACTGCAGATGGGCCCAAGCATATTGAGACAACCCTTACACGGGTCAAATTTGAAGAGCTGTGCTCTGATTTGCTTGACAGGCTGAAGACTCCTGTCGAGAATGCATTGAGAGATGCCAAGTTGTCTTATAAGGACTTGGATGAAATTATTTTGGTTGGTGGGTCTACTAGAATTCCCGCTGTTCAGGATCTGGTCAAGAGAGTGACCAACAAAGAGCCAAATGTCACTGTCAACCCAGATGAGGTTGTAGCTCTAGGGGCAGCAGTCCAGGCTGGAGTGCTAGCGGGTGATGTTAGCGACATCGTGCTTCTTGATGTTACTCCGCTGTCACTTGGGCTGGAAACTCTTGGTGGTGTAATGACGAAAATCATTCCTCGGAACACTACACTACCAACCTCAAAATCTGAGGTGTTTTCTACGGCTGCTGATGGTCAGACAAGTGTTGAAATTAATGTTCTGCAAGGTGAACGAGAATTTGTCAAGGACAACAAGTCGCTCGGGAGTTTTCGGTTGGATGGAATTCCTCCTGCTCCACGAGGTGTACCTCAAATAGAGGTGAAGTTTGATATTGATGCAAACGGTATTCTTTCAGTCGCTGCTGTGGACAAAGGCACTCAAAAGAAGCAGGATATAACAATTACCGGTGCTAGCACCTTGCCAACTGATGAGGTTGAAAAAATGGTGAAAGAGGCTGAGAGATTTTCTAAAGAAGACAAAGAGAAGAGAGAAGCTATTGATACAAAGAATCAAGCTGATTCTGTCGTCTATCAGACTGAGAAGCAGTTGAAGGAACTTGGTGATAAGGTACCCGCAGAAGTCAAGGACAAGGTGGAAGCTAAGCTGAAAGAACTTAAAGATGCAATTGCCAGTGGGTCAACGCAGTCAATGAAGGATACGATGGCAGCTCTCAACCAAGAAGTGATGCAGTTAGGGCAATCTCTTTACAACCAGCCTGGAGCTGCTGGCGGACCAACCGCTGGCGGGGAAGCAGGGTCTGGTAGTACTGGAGGAAAAACATCTGGGGGTGATGATGTTATAGATGCTGATTTTACAGACAGCAACTAA___ACCCACTATAATGGGTTACTTGATTTCTTGGAATAATTTTCATTCTAGTTTCAGAGTTGGCCCGTAGAGAACATGTTTAGTTGTGAATGGAGCTTTTTGTGATAGAACATTTTACCTCTAGCATTTGAAATACGTCTTATGTTTTGTAGATAAAATTTATCACTCCATTCAAAAGGTGTTTCAATCGGGGACAGAGCAGAATACCGCCAACAAGATGTTTGTTTCACGGTTCTCATCTTTTTACCCGCAAGAAATATATAGTGGGATGTACCTTGAGTTCTTTAATGAATTTTAAATAATCAATGCACATT

Fln Alignment:

Contig11615___GIPHTNTXXXXXXXXXXXXSAFFGLGLGKNPVFNGGFGSLXXXXXXXXXXRAAGPLRVVCEKVVGIDLGTTNSAVAAMEGGKPTIITNAEGQRTTPSVVAYSKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVSEESKQVSYRVIRDDNGNVKLDCPAIGKQFAAEEISAQVLRKLVDDATKFLNDKVNKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASSFKKDEGIDLLKDKQALQRLTETAEKAKIELSSLTQTSISLPFITATADGPKHIETTLTRVKFEELCSDLLDRLKTPVENALRDAKLSYKDLDEIILVGGSTRIPAVQDLVKRVTNKEPNVTVNPDEXXXXXXXXXXXXXXXXVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVKDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVAAVDKGTQKKQDITITGASTLPTDEVEKMVKEAERFSKEDKEKREAIDTKNQADSVVYQTEKQLKELGDKVPAEVKDKVEAKLKELKDAIASGSTQSMKDTMAALNQEVMQLGQSLYNQPXXXXXXXXXXXXXXXXXXXXXXXGDDVIDADFTDSN
B8LLU0__________________GIPHTHTSSSRKPSRGNRNSAFFGLGLGKNPVFNGGFGSLRSKQPQQSRRRAAGPLRVVCEKVVGIDLGTTNSAVAAMEGGKPTIITNAEGQRTTPSVVAYSKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVSEESKQVSYRVIRDDNGNVKLDCPAIGKQFAAEEISAQVLRKLVDDATKFLNDKVNKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASSFKKDEGIDLLKDKQALQRLTETAEKAKIELSSLTQTSISLPFITATADGPKHIETTLTRVKFEELCSDLLDRLKTPVENSLRDAKLSYKDLDEIILVGGSTRIPAVQDLVKRVTNKEPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVKDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVAAVDKGTAKKQDITITGASTLPTDEVEKMVKEAERFSKEDKEKREAIDTKNQADSVVYQTEKQLKELGEKVPAEVKDKVEAKLKELKDAIASGSTQSMKDTMAALNQEVMQLGQSLYNQPGPAGGPTAGGEAGPGSPGGKTPGGDDVIDADFTDSN

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
479	20	80			0.995493
481	16			83	0.994512
482		66		33	1.0
510	14	85			0.993533
514		85		14	0.993533
612	11			88	0.923564
614			88	11	0.923564
615	88		11		0.923564
616		88		11	0.923564
664		10		90	0.90298
673	10			90	0.90298
675			90	10	0.90298
676	87		12		0.992554
677	87			12	0.992554
687	12		87		0.992554
689	12	87			0.992554
702		14		85	0.993533
703	14			85	0.993533
844	11		88		0.923564
845		11		88	0.923564
846	11		88		0.923564
847			88	11	0.923564
848	87			12	0.992554
879		80		20	0.995493
909		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
2263	2275	TGC TGC TGC TGC T	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain