SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11608

Length: 1046 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11608

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13801	43/44

Source	Descriptions	Term	Type	e value	Identity
AutoFact	abscisic acid water deficit stress and ripening inducible-like protein [Pseudotsuga menziesii var. menziesii] gb\|AAV92160.1\| abscisic acid water deficit stress and ripening inducible-like protein [Pseudotsuga menziesii var. menziesii] gb\|AAV92161.1\| absci	-	-	5.0e-16	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	abscisic acid water deficit stress and ripening inducible-like protein	-	-	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	ABA/WDS induced protein	IPR003496	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPQ5

Fln msg:

Fln protein: MNMSERHHHHFFHHHRNDENYDNVNTNSSSNYGYGSGGSQNPYGPSDYQTGYLEYDTGDTGSDYKASHGDSNDYQTGYDYNAGNNYQTGYGNDYQTVYKAGNDYRSDSASNSGNNYQSGYDGGYNYQQNQSGDYERFQKEVKHEKRMEHLGEAEAVAAGAFALYERHEVKADPEHARRHKLEEEAAAAAAVAGGGFAMYEHHERKEHQKEAEKVMGGRKHHHRRFF*

Protein Length: 228

Fln nts: ATTTCTTTTTCTTTCCTCTGA_-_ATGAACATGTCTGAAAGGCATCATCACCACTTCTTCCACCACCATCGAAACGATGAGAACTATGATAACGTGAATACGAATTCGAGTTCGAATTATGGTTACGGCTCTGGTGGTAGTCAGAATCCCTATGGACCCTCAGATTACCAGACCGGCTATCTTGAATATGATACCGGCGACACCGGAAGTGATTATAAAGCTAGTCATGGGGACAGCAATGATTACCAGACTGGTTATGACTATAACGCCGGCAATAATTATCAGACTGGTTACGGCAACGATTACCAGACTGTTTATAAGGCCGGCAATGATTACCGCTCGGACTCTGCCTCTAACTCCGGCAATAATTACCAGAGTGGTTATGACGGTGGTTATAATTATCAGCAAAACCAATCCGGTGATTATGAGAGATTTCAAAAGGAGGTGAAGCACGAGAAGCGCATGGAGCATCTCGGGGAGGCTGAAGCCGTGGCAGCCGGAGCCTTCGCACTGTATGAAAGGCATGAGGTAAAGGCGGATCCCGAGCATGCGAGGAGGCACAAGTTGGAGGAAGAGGCCGCTGCGGCGGCCGCTGTGGCCGGCGGGGGGTTTGCGATGTACGAGCACCACGAGAGGAAAGAACACCAGAAGGAAGCGGAGAAGGTCATGGGTGGCCGCAAGCATCACCACCGCCGCTTCTTCTGA___ACATGGTAATTCCTGGTGCTGCGCTCCAATGGCCGACTTTTATAACAGTGGCCTGTTTCTAAGCGAGTGTCAAATAAATGGAGATAAAAAGGAGAAAAAACAAAAGTTCTTCTGTTATGTTTTATGAAATTGTAGTTTTAGAGTCTGTAGGTGTGTTCTGTGGCTTAAGTCCAGCTTTGTAATCTGGTCAGTGAAAAGGTAACTGCCATGTTCTCTCAGTCTGCTGGACTCTCAGAAGTTTCAGGTGTAAGTAATGGCAATTTGCTTCTTTCTTTGTTTGAACAATATGCCATGTATTTTCAAAATAATTAAAAATTCCTATATTGTGTGTATGGTACCACATT

Fln Alignment:

Contig11608___RNDENYDNVNTXXXXXXXXXXXXXXXXXXXXDYQTGYLEYDTGDT-------GSDYKASHGDSNDYQTGYDYNAGNNYQTGY--GNDYQTVYKAGNDYRSDSASNSGNNYQSGYDGGYNYQQNQSGDYERFQKEVKHEKRMEHLXXXXXXXXXXXXLYERHEVKADPEHARRHKLXXXXXXXXXXXXXXXXMYEHHERKEHQKEAEKVMGG
A9NPQ5__________________RKEENNDSVNSNYGYGSGSNQNPYGAS----DYQTGY-DYNGGNDFQSGYNGGNDYQTRYNGGNDYGTGYGYNAGNDSQTGYNAGNDYQTGYNGGNDYRSGSAYNAGNDYQTGYNAGYDYQQNQSNDYERFRKEEKHDQRMEHVGELGAAAAGAFALYERHEVKTDPEHARRHRMEEEAAAAAAVASGGYALYERHEKKEHEEEAEQASGG

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
308	33	66			0.997452
343	25			75	0.996473
344	25	75			0.996473
347		75		25	0.996473
356	20	80			0.995493
357	20	80			0.995493
358			80	20	0.995493
360		80		20	0.995493
378		40		60	1.0
388	16		83		0.994512
389	16		83		0.994512
413		85	14		0.993533
414		85		14	0.993533
750	33		66		0.997452
751		33		66	0.997452
752	33		66		0.997452
753			66	33	0.997452
754		66		33	0.997452
903			83	16	0.994512
962	14		71	14	0.984337

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain