SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11606

Length: 1157 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11606

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23132	32/33

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L4 n=1 Tax=Prunus armeniaca RepID=RL4_PRUAR	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	60s ribosomal protein l4-1	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	88%
Blast2go	cell wall	GO:0005618	Cellular Component	88%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	88%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	88%
Blast2go	chloroplast	GO:0009507	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L4/L1e	IPR002136	-	0.0	-
Sma3	Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site	IPR013000	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LK49

Fln msg: your sequence is shorter than subject: 382 - 406

Fln protein: NVVPLPDVLKACIRPDIVEFVHANMAKNKRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRHAVVSALSASAIPALVMARGHRIESVPELPLVLSDDVEGVEKTSAALKVLKKVGASADVEKAKKSLSIRAGKGKMRNRRYVSRKGPLIVYATEGAKLVKAFRNIPGVEIACVDRLNLLKLAPGGHLGRFIIWTKSAFEKLDSTFGGFEKESLQKKGYVLPRAKMVNSDLARIVNSDEIQSVVKPINRKIKRKPLKKNPLKNLGSLLKLNPHAKTARRMALLAEEQRAKAKQEKLDKKRKEPKADKDAIKAAGKSWYKTMVSDSDYTEFENFSKWLGVTQ*

Protein Length: 383

Fln nts: AATGTTGTTCCCCTTCCGGACGTACTGAAGGCGTGCATCAGGCCTGATATTGTGGAATTCGTTCACGCAAACATGGCCAAAAATAAACGCCAACCCTACGCCGTCAGCAAGAAGGCTGGTCATCAGACTTCCGCAGAGTCATGGGGAACGGGGCGGGCGGTTTCCAGAATTCCCCGCGTTGCCGGAGGGGGAACACACAGAGCTGGCCAGGGAGCCTTCGGCAACATGTGCCGTGGCGGCAGGATGTTTGCTCCCACGAAAATATGGCGAAAATGGCACCGGAAAATCAACTTAAACCAGAAGAGACACGCGGTGGTCTCTGCTCTGTCGGCGTCTGCGATCCCCGCCCTCGTCATGGCCCGAGGTCACAGGATCGAATCCGTCCCGGAGCTGCCGCTCGTTCTCAGCGATGACGTCGAAGGGGTCGAGAAAACCTCGGCTGCTCTGAAGGTTTTGAAGAAGGTGGGTGCTTCTGCTGACGTGGAAAAGGCCAAGAAAAGTCTCAGTATTCGTGCCGGTAAGGGTAAGATGAGGAACAGACGGTATGTTTCACGCAAGGGTCCTTTGATTGTTTATGCCACTGAAGGGGCTAAACTTGTTAAGGCTTTCAGGAATATTCCGGGTGTGGAGATCGCGTGCGTTGATAGATTGAATTTGCTGAAGCTTGCTCCTGGTGGGCATTTGGGTCGTTTCATTATATGGACAAAGTCTGCTTTTGAGAAGCTTGATAGTACTTTCGGGGGTTTTGAGAAGGAGTCTTTGCAGAAGAAGGGATATGTTCTGCCTCGTGCAAAGATGGTCAATTCGGATCTGGCAAGGATCGTAAATTCTGATGAAATCCAGTCTGTTGTGAAACCCATCAACAGGAAAATTAAGCGGAAGCCGCTGAAGAAGAACCCGCTTAAGAACTTAGGTTCTCTTCTAAAGCTCAACCCACATGCGAAAACTGCAAGGCGAATGGCTCTCTTGGCCGAGGAGCAGCGTGCCAAGGCCAAACAGGAGAAGCTGGACAAGAAGAGGAAGGAACCAAAGGCTGATAAGGATGCAATCAAGGCAGCAGGAAAATCATGGTACAAAACCATGGTTTCAGATAGTGACTACACGGAATTTGAGAACTTTTCTAAATGGCTTGGTGTGACACAGTAA___AGCAAAAATGG

Fln Alignment:

Contig11606___NVVPLPDVLKACIRPDIVEFVHANMAKNKRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRHAVVSALSASAIPALVMARGHRIESVPELPLVLSDDVEGVEKTSAALKVLKKVGASADVEKAKKSLSIRAGKGKMRNRRYVSRKGPLIVYATEGAKLVKAFRNIPGVEIACVDRLNLLKLAPGGHLGRFIIWTKSAFEKLDSTFGGFEKESLQKKGYVLPRAKMVNSDLARIVNSDEIQSVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAKTARRMALLAEEQRAKAKQEKLDKKRKEPXXXXXXXXXXXXSWYKTMVSDSDYTEFENFSKWLGVTQ
B8LK49__________________DAVPLPDVLKACIRPDIVEFVHANMAKNKRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRHAVVSALAASAIPALVMARGHRIESVPELPLVLSDGVEGVEKTSAALKVLKKVGAFADVEKAKKSHSIRAGKGKMRNRRYVSRKGPLIVYATEGAKLVKAFRNIPGVEIACVDRLNLLKLAPGGHLGRFIIWTKSAFEKLDSTFGGFEKESLQKKGYVLPRAKMVNSDLARIVNSDEIQSVVRPINREIKRKPLKKNPLKNLGALLKLNPHAKTARRMALLADEQRAKAKQEKLDKKRKEPKENKDAIKAAGKAWYKTMVSDSDYTEFENFSKWLGVTQ

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
836	12		87		0.992554
837	87	12			0.992554
839	87			12	0.992554
927	87			12	0.992554
934	12	87			0.992554
936	12	87			0.992554
937	87			12	0.992554
938		87		12	0.992554
943	14		85		0.993533
962	14		85		0.993533
964	14			85	0.993533
965		85		14	0.993533
1000	16		83		0.994512
1001		16	83		0.994512
1003	16		66	16	0.988813
1004	66	16		16	0.988813
1006			80	20	0.995493
1007		80		20	0.995493
1149	33		66		0.997452
1151	33	33		33	0.997753
1152	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain