SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11596

Length: 1355 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11596 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16462	35/40
SustainPine v2.0	sp_v2.0_unigene60367	1/40
SustainPine v2.0	sp_v2.0_unigene81122	4/40

Source	Descriptions	Term	Type	Identity
AutoFact	[U] COG0201 Preprotein translocase subunit SecY	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein transport protein sec61 subunit alpha	-	-	96%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	96%

Source	InterPros	Term	Type	e value	Identity
Sma3	SecY protein	IPR002208	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKZ6

Fln msg: Distance to subject end: 64 aas, your sequence is shorter than subject: 414 - 478

Fln protein: MPSGGFRVLHLVRPFLSILPEVQTAERKVPFREKVLYTVISLFIFLVCSQLPLYGIHSATGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNSVREDRALLNGAQKLLGVLITIGEAVAYVLSGMYGDIADLGAGNAILIIVQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLVFLVVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFLVNMLGKWKESEYSASGQSVPVGGLVYYITPPSSLAEMAANPFHALFYLTFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQ

Protein Length: 415

Fln nts: AATGTTAGAGGCGCATCTATTGCAGATCGTTAATCCCCTGCAGCGGATCAGTAGTTTTCCAGGCTCAAATTTGTAAGTTTGTTAATTTGGACTGTTCTTTGGAGAAGGAAAA_-_ATGCCAAGCGGTGGGTTTCGTGTGCTGCATCTTGTGAGACCATTTCTTTCAATCTTACCAGAAGTCCAGACGGCTGAAAGAAAAGTACCCTTTAGGGAGAAGGTTCTTTACACTGTAATCTCCCTTTTCATCTTTCTGGTATGCAGTCAGTTGCCTCTATATGGAATACATTCAGCAACCGGTGCGGATCCATTCTATTGGATGCGTGTAATTCTGGCTTCTAATCGGGGAACTGTCATGGAACTTGGTATCACCCCAATTGTTACCTCGGGCCTAGTAATGCAACTTTTGGCAGGATCCAAGATAATCGAGGTGGATAATAGTGTTCGTGAAGATCGGGCACTGCTCAATGGTGCTCAGAAGTTACTTGGAGTTCTCATCACAATAGGTGAGGCAGTTGCATATGTGCTGTCTGGAATGTATGGTGACATCGCAGACCTTGGAGCTGGCAATGCCATCCTTATTATTGTCCAGCTCTTTTTTGCTGGTATAATTGTGATATGTTTGGATGAGTTACTCCAGAAAGGGTATGGATTGGGGTCTGGCATTTCGTTGTTCATTGCTACTAATATATGTGAGAGCATAATATGGAAGGCATTTAGTCCTACAACAATTAATAGTGGACGAGGTGCAGAGTTTGAGGGAGCTGTCATTGCATTGTTCCATTTGTTGATAACCAGAACTGACAAGGTCCGGGCTCTGCGAGAAGCTTTTTATAGGCAGAATCTACCAAATGTCACCAACCTGCTTGCCACAGTTTTGGTTTTTCTCGTTGTAATATACTTCCAAGGTTTTCGTGTTGTTTTACCTGTGAGGTCAAAGAATGCACGTGGGCAGCAGGGGTCATATCCTATCAAGTTATTCTATACCTCAAACATGCCAATTATTCTGCAGTCAGCTCTTGTTTCAAATTTGTATTTTATTTCCCAGCTGCTTTATCGAAAGTACAGTGGAAACTTCCTTGTTAATATGTTGGGAAAGTGGAAGGAGTCTGAATACTCAGCAAGCGGGCAGTCAGTTCCTGTAGGTGGTCTTGTTTATTACATTACTCCACCTTCCAGCTTGGCAGAGATGGCAGCAAATCCCTTCCATGCTCTTTTCTATTTGACTTTTATGCTGACCGCATGTGCACTGTTTTCAAAGACATGGATTGAAGTATCTGGTTCCTCTGCCAGAGATGTGGCAAAACAACTAAAGGAGCAACAAATGGTTATGCCAGGCCACAGAGAATCTAATCTTCAGA

Fln Alignment:

Contig11596___MPSGGFRVLHLVRPFLSILPEVQTAERKVPFREKVLYTVISLFIFLVCSQLPLYGIHSATGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNSVREDRALLNGAQKLLGVLITIGEAVAYVLSGMYGDIADLGAGNAILIIVQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLVFLVVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFLVNMLGKWKESEYSASGQSVPVGGLVYYITPPSSLAEMAANPFHALFYLTFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQ
B8LKZ6__________________MPSGGFRVLHLVRPFLSILPEVQTADRKVPFREKVLYTVISLFIFLVCSQLPLYGIHSATGADPFYWMRVILASNRGTVMELGITPLVTSGLVMQLLAGSKIIEVDNSVREDRELLNGAQKLLGVLITIGEAVAYVLSGMYGDITDLGAGNAILIIVQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFLVNMLGKWKESEYSSSGQSIPVGGLVYYITPPSSLAEMAANPFHALFYLTFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQ

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
663		16		83	0.999991
664	16		83		0.999991
665		83		16	0.999991
674	90			10	0.90298
682	88			11	0.923564
683	11		88		0.923564
686	87			12	0.992554
748		83	16		0.994512
749	83			16	0.994512
754	16			83	0.994512
757	80			20	0.995493
850	16			83	0.994512
851		16	83		0.994512
852	16	83			0.994512
853		83		16	0.994512
921		85		14	0.993533
922	85		14		0.993533
988	14			85	0.993533
989		14	85		0.993533
990	14		85		0.993533
991			85	14	0.993533
992			85	14	0.993533
1025	12		87		0.992554
1026	87	12			0.992554
1028			87	12	0.992554
1029		87		12	0.992554
1108		66	33		1.0
1164	33			66	0.997452
1165		33		66	0.997452
1166	33			66	0.997452
1167		66		33	0.997452
1201		33	66		0.997452
1203	66			33	0.997452
1204	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain