SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11577

Length: 1548 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11577

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7013	46/46

Source	Descriptions	Term	Type	Identity
AutoFact	Aspartate aminotransferase n=2 Tax=Pinaceae RepID=PAT_PINPS	-	-	94%
FL-Next	sp=Aspartate aminotransferase; Pinus pinaster (Maritime pine).	-	-	99%
Blast2go	aspartate aminotransferase	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glutamate--prephenate aminotransferase.	EC:2.6.1.79	-	0.0	88%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Biosynthesis of plant hormones	01070		0.0	88%
Blast2go	Aspartate transaminase.	EC:2.6.1.1	-	0.0	88%

Source	KEGGs	Term	Type	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250		88%
Blast2go	Cysteine and methionine metabolism	00270		88%
Blast2go	Arginine and proline metabolism	00330		88%
Blast2go	Tyrosine metabolism	00350		88%
Blast2go	Phenylalanine metabolism	00360		88%
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400		88%
Blast2go	Carbon fixation in photosynthetic organisms	00710		88%
Blast2go	Isoquinoline alkaloid biosynthesis	00950		88%
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960		88%
Blast2go	Biosynthesis of phenylpropanoids	01061		88%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064		88%
Blast2go	Biosynthesis of plant hormones	01070		88%
Blast2go	Metabolic pathways	01100		88%
Blast2go	Biosynthesis of secondary metabolites	01110		88%
Blast2go	1-aminocyclopropane-1-carboxylate synthase.	EC:4.4.1.14	-	88%

Source	KEGGs	Term	Identity
Blast2go	Cysteine and methionine metabolism	00270	88%
Blast2go	Biosynthesis of plant hormones	01070	88%
Blast2go	Metabolic pathways	01100	88%
Blast2go	Biosynthesis of secondary metabolites	01110	88%

Source	GOs	Term	Type	Identity
Blast2go	1-aminocyclopropane-1-carboxylate biosynthetic process	GO:0042218	Biological Process	88%
Blast2go	glutamate-prephenate aminotransferase activity	GO:0033854	Molecular Function	88%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	88%
Blast2go	L-aspartate:2-oxoglutarate aminotransferase activity	GO:0004069	Molecular Function	88%
Blast2go	1-aminocyclopropane-1-carboxylate synthase activity	GO:0016847	Molecular Function	88%
Blast2go	chloroplast	GO:0009507	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	1-aminocyclopropane-1-carboxylate synthase	IPR001176	-	-
Sma3	Aminotransferase, class I/classII	IPR004839	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q5F4K8

Fln msg: your sequence is shorter than subject: 433 - 492

Fln protein: RGLFNIRAMAETDSGNGVPQLDISLSPRVAALKPSKTMAITDLATALKQAGVPVIGLAAGEPDFNTPDAVAEAGIKAIQDGYTRYTPNAGTMEIRTAICHKLKEENGLSYTPDQILVSNGAKQCIMQAVLAVCSPGDEVIIPAPFWVSYTEMARLADATPVIIPTLLSDDFLLNPEVFSSKLNENSRLLILCSPSNPTGSVYPRELLEEIAKIVAKHPKLLVLSDEIYEHIMYPPAKHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYLAGPKHFVTACGRIQSQSTSGASSISQKAGVAALALGYAGSEAVSTMVKAYRERRDFLVQRLQAMEGVKLPVPQGAFYLFPDFSSYYGTEVEDFGVINGSEALCRFFLEKAQVALVPGDAFGNDDCIRISYAASLDTLRTAINNIEKSLLLLRPAAAASKAS*

Protein Length: 434

Fln nts: CGGGGCTTGTTCAACATAAGAGCCATGGCTGAGACGGACAGTGGAAATGGTGTACCACAACTTGATATCTCACTGAGTCCAAGGGTGGCAGCCCTTAAACCATCAAAGACAATGGCCATAACAGACCTTGCAACTGCACTTAAGCAAGCTGGAGTTCCTGTTATCGGATTAGCAGCTGGTGAACCTGATTTTAATACACCAGATGCAGTAGCTGAGGCAGGCATTAAGGCAATTCAGGATGGCTATACTCGATATACACCTAATGCAGGAACTATGGAGATTAGAACTGCTATTTGTCATAAGTTAAAAGAGGAAAATGGCCTCTCATATACACCTGACCAGATATTGGTTAGTAACGGAGCAAAACAATGCATCATGCAAGCTGTTTTAGCAGTTTGTTCACCGGGTGATGAGGTTATTATTCCAGCTCCATTTTGGGTAAGCTATACTGAAATGGCTCGGTTAGCAGATGCAACTCCAGTGATAATTCCAACTTTATTATCAGATGATTTTCTATTGAATCCAGAAGTATTTTCTTCAAAGCTGAATGAAAATTCAAGGTTATTGATTCTTTGTTCACCTTCCAACCCAACTGGATCTGTTTATCCAAGAGAATTGCTAGAAGAAATAGCAAAAATTGTTGCAAAGCATCCTAAGTTACTGGTTCTGTCAGATGAAATCTACGAACACATTATGTATCCACCAGCAAAGCACACGAGCTTTGCTTCTTTGCCAGGAATGTGGGAAAGAACACTGACTGTTAATGGATTCTCTAAGGCCTTTGCAATGACAGGTTGGCGACTTGGGTACTTGGCAGGACCAAAGCACTTTGTTACAGCTTGTGGAAGAATTCAGAGCCAGTCCACATCAGGTGCTAGCAGTATCTCTCAGAAAGCAGGGGTTGCTGCTTTGGCCTTGGGATATGCTGGTAGTGAAGCAGTGTCTACTATGGTCAAAGCATACAGGGAGAGGAGAGACTTCTTAGTCCAAAGATTGCAAGCCATGGAGGGTGTTAAATTACCAGTGCCTCAGGGTGCTTTTTATTTATTTCCCGATTTTAGTTCCTACTATGGAACTGAAGTGGAAGATTTTGGTGTTATCAATGGCTCAGAAGCTCTCTGTCGTTTCTTCCTAGAGAAGGCACAAGTTGCTCTTGTCCCAGGAGATGCCTTCGGCAATGATGACTGCATTCGTATTTCATATGCTGCATCCCTTGACACGCTTAGAACAGCCATAAACAATATAGAGAAGTCCTTGTTGCTTCTGCGCCCTGCTGCTGCAGCATCTAAGGCAAGCTAA___CTACTGAGTAATATTTAGTGATTCTGAAGAGCAATAATGTTTCACATGGAATTATATTCTCACCATATATCTTGAAATGGCCTGAAAGGTGGCCAGACTATATAAAGAACACTGGAAAAAATGTTCAAGTTTAGGTAGAACTTTAGAAGTTGAGTTGAATGTGTCAACCATCTCTAGGTGTTGAAAATTTGCTATTGCTGTTATATGTGTTCATTTTACCAATGTTCGTAGTAAAAGTCAGTTTCTTGT

Fln Alignment:

Contig11577___LFNIRAMAETDSGNGVPQLDISLSPRVAALKPSKTMAITDLATALKQAGVPVIGLAAGEPDFNTPDAVAEAGIKAIQDGYTRYTPNAGTMEIRTAICHKLKEENGLSYTPDQILVSNGAKQCIMQA-VLAVCSPGDEVIIPAPFWVSYTEMARLADATPVIIPTLLSDDFLLNPEVFSSKLNENSRLLILCSPSNPTGSVYPRELLEEIAKIVAKHPKLLVLSDEIYEHIMYPPAKHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYLAGPKHFVTACGRIXXXXXXXXXXXXXKXXXXXXXXXXXXSEAVSTMVKAYRERRDFLVQRLQAMEGVKLPVPQGAFYLFPDFSSYYGTEVEDFGVINGSEALCRFFLEKAQVALVPGDAFGNDDCIRISYAASLDTLRTAINNIEK
Q5F4K8__________________LFNIRAMAETDSGNGVPQLDISLSPRVAALKPSKTMAITDLATALKQAGVPVIGLAAGEPDFNTPDAVAEAGIKAIQDGYTRYTPNAGTMEIRTAICHKLKEENGLSYTPDQILVSNGAKQCIMAAAVLAVCSPGDEVIIPAPFWVSYTEMARLADATPVIIPTLLSDDFLLNPEVFSSKLNENSRLLILCSPSNPTGSVYPRELLEEIAKIVAKHPKLLVLSDEIYEHIMYPPAKHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYLAGPKHFVTACGRIQSQSTSGASSISQKAGVAALALGYAGSEAVSTMVKAYRERRDFLVQRLQAMEGVKLPVPQGAFYLFPDFSSYYGTEVEDFGVINGSEALCRFFLEKAQVALVPGDAFGNDDCIRISYAASLDTLRTAINNIEK

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
566			75	25	0.996473
593	20	60		20	0.99255
594		60	20	20	0.99255
595		60	20	20	0.99255
596	80			20	0.995493
687	16			83	0.994512
689		83		16	0.994512
691	83			16	0.994512
726	14			85	0.993533
727	14			85	0.993533
765	12		87		0.992554
766	12			87	0.992554
768	87		12		0.992554
769	87			12	0.992554
775	12			87	0.992554
777	12			87	0.992554
778		87		12	0.992554
920	14	85			0.993533
921	14			85	0.993533
1047	20			80	0.995493
1049		20		80	0.995493
1050			20	80	0.995493
1051			20	80	0.995493
1053	20			80	0.995493
1054		20		80	0.995493
1056	16	66	16		0.988813
1057	16	83			0.994512
1058		80		20	0.995493
1060	80			20	0.995493
1128	14	85			0.993533
1129	14		85		0.993533
1131			14	85	0.993533
1156	14	85			0.993533
1157		14		85	0.993533
1158	14	85			0.993533
1192			88	11	0.923564
1195	11			88	0.923564
1253		10	90		0.90298
1352			90	10	0.90298
1364	11			88	0.923564
1367		88		11	0.923564
1368		88		11	0.923564
1384	25		75		0.996473
1386	25	75			0.996473
1388			75	25	0.996473
1502	33	66			0.997452
1503		33		66	0.997452
1504	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain